Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP54Q70EL1 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.31■■□□□ 1.48
USP54Q70EL1 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC24.3■■□□□ 1.48
USP54Q70EL1 RPS2P1-201ENST00000434010 821 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC24.3■■□□□ 1.48
USP54Q70EL1 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
USP54Q70EL1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC24.3■■□□□ 1.48
USP54Q70EL1 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC24.3■■□□□ 1.48
USP54Q70EL1 AC010460.3-201ENST00000511359 1579 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC24.3■■□□□ 1.48
USP54Q70EL1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC24.3■■□□□ 1.48
USP54Q70EL1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC24.3■■□□□ 1.48
USP54Q70EL1 KRT18P13-201ENST00000400056 1290 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC24.3■■□□□ 1.48
USP54Q70EL1 KRT18P27-201ENST00000427733 1299 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC24.3■■□□□ 1.48
USP54Q70EL1 POLD2P1-201ENST00000511220 997 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 OR7E14P-202ENST00000530490 1290 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC24.3■■□□□ 1.48
USP54Q70EL1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC24.3■■□□□ 1.48
USP54Q70EL1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 AC139530.3-201ENST00000620344 690 ntBASIC24.3■■□□□ 1.48
USP54Q70EL1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC24.3■■□□□ 1.48
USP54Q70EL1 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP54Q70EL1 SIGLEC16-201ENST00000599858 1437 ntBASIC24.29■■□□□ 1.48
USP54Q70EL1 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
USP54Q70EL1 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC24.29■■□□□ 1.48
USP54Q70EL1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC24.29■■□□□ 1.48
USP54Q70EL1 AC073130.3-201ENST00000624389 2278 ntBASIC24.29■■□□□ 1.48
USP54Q70EL1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC24.29■■□□□ 1.48
USP54Q70EL1 LBH-204ENST00000406087 559 ntTSL 4 BASIC24.29■■□□□ 1.48
USP54Q70EL1 COX10-202ENST00000429152 875 ntTSL 2 BASIC24.29■■□□□ 1.48
USP54Q70EL1 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP54Q70EL1 AC140113.2-201ENST00000604370 208 ntBASIC24.29■■□□□ 1.48
USP54Q70EL1 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC24.29■■□□□ 1.48
USP54Q70EL1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP54Q70EL1 AC099343.3-201ENST00000605834 2503 ntBASIC24.29■■□□□ 1.48
USP54Q70EL1 AL031598.1-201ENST00000561511 1773 ntBASIC24.29■■□□□ 1.48
USP54Q70EL1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP54Q70EL1 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP54Q70EL1 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC24.29■■□□□ 1.48
USP54Q70EL1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC24.28■■□□□ 1.48
USP54Q70EL1 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC24.28■■□□□ 1.48
USP54Q70EL1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC24.28■■□□□ 1.48
USP54Q70EL1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC24.28■■□□□ 1.48
USP54Q70EL1 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC24.28■■□□□ 1.48
USP54Q70EL1 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC24.28■■□□□ 1.48
USP54Q70EL1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC24.28■■□□□ 1.48
USP54Q70EL1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC24.28■■□□□ 1.48
USP54Q70EL1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
USP54Q70EL1 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
USP54Q70EL1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
USP54Q70EL1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 AL356309.3-201ENST00000624132 1934 ntBASIC24.28■■□□□ 1.48
USP54Q70EL1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP54Q70EL1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC24.27■■□□□ 1.48
USP54Q70EL1 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC24.27■■□□□ 1.48
USP54Q70EL1 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC24.27■■□□□ 1.48
USP54Q70EL1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP54Q70EL1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms