Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 TSPY15P-201ENST00000457163 923 ntBASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 GMCL1P1-201ENST00000463439 1581 ntBASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.17■□□□□ 0.82
CCDC40Q4G0X9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 WWOX-216ENST00000569818 525 ntBASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 HOXB1-202ENST00000577092 1414 ntBASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC40Q4G0X9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 PKD1P1-201ENST00000458669 6805 ntBASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 AL163051.1-201ENST00000569214 1512 ntBASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 AC020916.1-201ENST00000587762 1774 ntBASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC40Q4G0X9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC40Q4G0X9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
CCDC40Q4G0X9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC40Q4G0X9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.14■□□□□ 0.82
CCDC40Q4G0X9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 REXO1L9P-201ENST00000604264 2108 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 AC009102.3-201ENST00000623118 1491 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 KRT8P7-201ENST00000533003 1432 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 KRT8P9-201ENST00000558927 1449 ntBASIC20.14■□□□□ 0.81
CCDC40Q4G0X9 TSPY14P-201ENST00000303979 915 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms