Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USP41Q3LFD5 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.46■□□□□ 0.71
USP41Q3LFD5 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USP41Q3LFD5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.45■□□□□ 0.7
USP41Q3LFD5 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.44■□□□□ 0.7
USP41Q3LFD5 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 AP002469.2-201ENST00000531724 424 ntBASIC19.44■□□□□ 0.7
USP41Q3LFD5 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
USP41Q3LFD5 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.44■□□□□ 0.7
USP41Q3LFD5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USP41Q3LFD5 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 LETM1P2-201ENST00000597330 2178 ntBASIC19.43■□□□□ 0.7
USP41Q3LFD5 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 SDHAP2-201ENST00000455183 2001 ntBASIC19.43■□□□□ 0.7
USP41Q3LFD5 TNXA-203ENST00000507684 2038 ntBASIC19.43■□□□□ 0.7
USP41Q3LFD5 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.43■□□□□ 0.7
USP41Q3LFD5 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP41Q3LFD5 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 TSPY12P-201ENST00000421279 868 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 SAPCD2P3-201ENST00000455031 850 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 AC106795.1-205ENST00000512851 1056 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 AL662844.1-201ENST00000546340 181 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 REXO1L6P-202ENST00000619970 1078 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms