Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
CDH4P55283 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.69■□□□□ 0.58
CDH4P55283 AL353692.3-201ENST00000407031 1396 ntBASIC18.69■□□□□ 0.58
CDH4P55283 AC016734.2-201ENST00000624325 1377 ntBASIC18.69■□□□□ 0.58
CDH4P55283 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH4P55283 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH4P55283 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
CDH4P55283 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH4P55283 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.69■□□□□ 0.58
CDH4P55283 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.69■□□□□ 0.58
CDH4P55283 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.69■□□□□ 0.58
CDH4P55283 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.69■□□□□ 0.58
CDH4P55283 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH4P55283 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.69■□□□□ 0.58
CDH4P55283 AC004263.2-201ENST00000617183 678 ntBASIC18.69■□□□□ 0.58
CDH4P55283 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH4P55283 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CDH4P55283 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.69■□□□□ 0.58
CDH4P55283 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CDH4P55283 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH4P55283 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.68■□□□□ 0.58
CDH4P55283 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 TSSC2-201ENST00000450217 709 ntBASIC18.68■□□□□ 0.58
CDH4P55283 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH4P55283 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH4P55283 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH4P55283 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
CDH4P55283 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.68■□□□□ 0.58
CDH4P55283 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CDH4P55283 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH4P55283 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
CDH4P55283 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH4P55283 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CDH4P55283 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDH4P55283 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH4P55283 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CDH4P55283 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH4P55283 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.67■□□□□ 0.58
CDH4P55283 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.67■□□□□ 0.58
CDH4P55283 AC093458.2-201ENST00000623150 629 ntBASIC18.67■□□□□ 0.58
CDH4P55283 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CDH4P55283 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH4P55283 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH4P55283 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH4P55283 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CDH4P55283 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH4P55283 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH4P55283 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH4P55283 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.66■□□□□ 0.58
CDH4P55283 CHCHD2P8-201ENST00000429873 447 ntBASIC18.66■□□□□ 0.58
CDH4P55283 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH4P55283 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.66■□□□□ 0.58
CDH4P55283 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH4P55283 AC090164.3-201ENST00000610780 2143 ntBASIC18.66■□□□□ 0.58
CDH4P55283 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH4P55283 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDH4P55283 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CDH4P55283 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH4P55283 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH4P55283 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH4P55283 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms