Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.59■□□□□ 0.73
VCPP55072 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VCPP55072 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VCPP55072 KRT18P1-202ENST00000452408 1331 ntBASIC19.59■□□□□ 0.73
VCPP55072 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.59■□□□□ 0.73
VCPP55072 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.59■□□□□ 0.73
VCPP55072 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.59■□□□□ 0.73
VCPP55072 AC092597.1-201ENST00000487352 616 ntBASIC19.59■□□□□ 0.73
VCPP55072 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.59■□□□□ 0.73
VCPP55072 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.59■□□□□ 0.73
VCPP55072 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 AC120114.3-201ENST00000611923 658 ntBASIC19.59■□□□□ 0.73
VCPP55072 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VCPP55072 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.59■□□□□ 0.73
VCPP55072 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.59■□□□□ 0.73
VCPP55072 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VCPP55072 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCPP55072 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
VCPP55072 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
VCPP55072 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCPP55072 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.58■□□□□ 0.73
VCPP55072 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCPP55072 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCPP55072 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCPP55072 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VCPP55072 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.58■□□□□ 0.73
VCPP55072 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
VCPP55072 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.58■□□□□ 0.73
VCPP55072 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.58■□□□□ 0.73
VCPP55072 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.58■□□□□ 0.72
VCPP55072 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
VCPP55072 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VCPP55072 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.58■□□□□ 0.72
VCPP55072 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC19.58■□□□□ 0.72
VCPP55072 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.58■□□□□ 0.72
VCPP55072 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
VCPP55072 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
VCPP55072 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.57■□□□□ 0.72
VCPP55072 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 MRPL3P1-201ENST00000400109 1033 ntBASIC19.57■□□□□ 0.72
VCPP55072 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.57■□□□□ 0.72
VCPP55072 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 AC117500.6-201ENST00000624871 588 ntBASIC19.57■□□□□ 0.72
VCPP55072 AC135050.7-201ENST00000624508 2218 ntBASIC19.57■□□□□ 0.72
VCPP55072 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VCPP55072 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.57■□□□□ 0.72
VCPP55072 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.57■□□□□ 0.72
VCPP55072 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.56■□□□□ 0.72
VCPP55072 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
VCPP55072 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.56■□□□□ 0.72
VCPP55072 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.56■□□□□ 0.72
VCPP55072 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.56■□□□□ 0.72
VCPP55072 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VCPP55072 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.56■□□□□ 0.72
VCPP55072 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VCPP55072 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.56■□□□□ 0.72
VCPP55072 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms