Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HTTP42858 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.51■□□□□ 0.87
HTTP42858 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.51■□□□□ 0.87
HTTP42858 AC190387.1-201ENST00000551683 408 ntBASIC20.51■□□□□ 0.87
HTTP42858 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
HTTP42858 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HTTP42858 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.51■□□□□ 0.87
HTTP42858 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.51■□□□□ 0.87
HTTP42858 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.51■□□□□ 0.87
HTTP42858 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC20.51■□□□□ 0.87
HTTP42858 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.51■□□□□ 0.87
HTTP42858 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HTTP42858 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
HTTP42858 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HTTP42858 MKNK2P1-201ENST00000437526 628 ntBASIC20.51■□□□□ 0.87
HTTP42858 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HTTP42858 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.51■□□□□ 0.87
HTTP42858 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.51■□□□□ 0.87
HTTP42858 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HTTP42858 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.5■□□□□ 0.87
HTTP42858 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC20.5■□□□□ 0.87
HTTP42858 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC20.5■□□□□ 0.87
HTTP42858 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 AL163051.1-201ENST00000569214 1512 ntBASIC20.5■□□□□ 0.87
HTTP42858 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.5■□□□□ 0.87
HTTP42858 NKAPP1-205ENST00000585790 367 ntBASIC20.5■□□□□ 0.87
HTTP42858 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
HTTP42858 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HTTP42858 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.5■□□□□ 0.87
HTTP42858 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HTTP42858 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 AC007274.1-201ENST00000439805 662 ntBASIC20.49■□□□□ 0.87
HTTP42858 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.49■□□□□ 0.87
HTTP42858 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.49■□□□□ 0.87
HTTP42858 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.49■□□□□ 0.87
HTTP42858 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.49■□□□□ 0.87
HTTP42858 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.49■□□□□ 0.87
HTTP42858 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.49■□□□□ 0.87
HTTP42858 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
HTTP42858 AL035252.4-201ENST00000624174 288 ntBASIC20.49■□□□□ 0.87
HTTP42858 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.49■□□□□ 0.87
HTTP42858 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
HTTP42858 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.49■□□□□ 0.87
HTTP42858 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.49■□□□□ 0.87
HTTP42858 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.49■□□□□ 0.87
HTTP42858 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.49■□□□□ 0.87
HTTP42858 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HTTP42858 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC20.48■□□□□ 0.87
HTTP42858 FP475955.4-201ENST00000623131 1990 ntBASIC20.48■□□□□ 0.87
HTTP42858 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.48■□□□□ 0.87
HTTP42858 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.48■□□□□ 0.87
HTTP42858 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HTTP42858 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.48■□□□□ 0.87
HTTP42858 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms