Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 HLA-J-201ENST00000462773 1622 ntBASIC31.64■■■□□ 2.66
CCDC88BA6NC98 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 AC112698.1-201ENST00000510299 916 ntBASIC31.64■■■□□ 2.66
CCDC88BA6NC98 AC010327.4-202ENST00000591484 748 ntBASIC31.64■■■□□ 2.66
CCDC88BA6NC98 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC31.64■■■□□ 2.66
CCDC88BA6NC98 AP002414.3-201ENST00000589352 1468 ntBASIC31.64■■■□□ 2.66
CCDC88BA6NC98 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
CCDC88BA6NC98 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
CCDC88BA6NC98 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.65
CCDC88BA6NC98 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 RPS2P28-201ENST00000314255 741 ntBASIC31.63■■■□□ 2.65
CCDC88BA6NC98 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 RPSAP43-201ENST00000402237 625 ntBASIC31.63■■■□□ 2.65
CCDC88BA6NC98 IMP4-203ENST00000409935 958 ntTSL 5 BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 AC107918.4-202ENST00000641623 219 ntBASIC31.63■■■□□ 2.65
CCDC88BA6NC98 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC88BA6NC98 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 GPX1P2-201ENST00000429271 606 ntBASIC31.62■■■□□ 2.65
CCDC88BA6NC98 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC31.62■■■□□ 2.65
CCDC88BA6NC98 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 AL591424.1-201ENST00000442569 1213 ntBASIC31.61■■■□□ 2.65
CCDC88BA6NC98 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 NKAPP1-205ENST00000585790 367 ntBASIC31.61■■■□□ 2.65
CCDC88BA6NC98 AP000867.4-201ENST00000641616 219 ntBASIC31.61■■■□□ 2.65
CCDC88BA6NC98 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC31.61■■■□□ 2.65
CCDC88BA6NC98 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 MTDHP4-201ENST00000600287 670 ntBASIC31.6■■■□□ 2.65
CCDC88BA6NC98 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC88BA6NC98 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 UPF3AP3-201ENST00000420996 769 ntBASIC31.59■■■□□ 2.65
CCDC88BA6NC98 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 YBX2P1-201ENST00000394192 760 ntBASIC31.59■■■□□ 2.65
CCDC88BA6NC98 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 RNF151-202ENST00000569210 853 ntTSL 2 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC31.59■■■□□ 2.65
CCDC88BA6NC98 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 COBL-210ENST00000632460 1941 ntTSL 5 BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC31.58■■■□□ 2.65
CCDC88BA6NC98 KIRREL3-AS3-201ENST00000404882 831 ntBASIC31.58■■■□□ 2.65
CCDC88BA6NC98 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC31.58■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms