Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PMS2P7-201ENST00000506558 1336 ntBASIC23.24■■□□□ 1.31
USP42Q9H9J4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP42Q9H9J4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP42Q9H9J4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 COX10-202ENST00000429152 875 ntTSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP42Q9H9J4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 FGFR3P6-201ENST00000457012 610 ntBASIC23.24■■□□□ 1.31
USP42Q9H9J4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC23.24■■□□□ 1.31
USP42Q9H9J4 AC005336.2-201ENST00000593183 939 ntBASIC23.24■■□□□ 1.31
USP42Q9H9J4 FAM215A-202ENST00000632077 792 ntBASIC23.24■■□□□ 1.31
USP42Q9H9J4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP42Q9H9J4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP42Q9H9J4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP42Q9H9J4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 BX842568.4-201ENST00000421222 227 ntBASIC23.23■■□□□ 1.31
USP42Q9H9J4 HNRNPDP1-201ENST00000439535 754 ntBASIC23.23■■□□□ 1.31
USP42Q9H9J4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 RPL13AP23-201ENST00000480739 586 ntBASIC23.23■■□□□ 1.31
USP42Q9H9J4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP42Q9H9J4 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC23.23■■□□□ 1.31
USP42Q9H9J4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 RCN1P2-201ENST00000398357 915 ntBASIC23.22■■□□□ 1.31
USP42Q9H9J4 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 TERC-201ENST00000602385 541 ntBASIC23.22■■□□□ 1.31
USP42Q9H9J4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 TNXA-203ENST00000507684 2038 ntBASIC23.22■■□□□ 1.31
USP42Q9H9J4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC23.22■■□□□ 1.31
USP42Q9H9J4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
USP42Q9H9J4 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC23.21■■□□□ 1.31
USP42Q9H9J4 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
USP42Q9H9J4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC23.21■■□□□ 1.31
USP42Q9H9J4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 AC073648.2-201ENST00000510116 352 ntBASIC23.21■■□□□ 1.31
USP42Q9H9J4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC23.21■■□□□ 1.31
USP42Q9H9J4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC23.21■■□□□ 1.31
USP42Q9H9J4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
USP42Q9H9J4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.21■■□□□ 1.31
USP42Q9H9J4 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.31
USP42Q9H9J4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP42Q9H9J4 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP42Q9H9J4 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP42Q9H9J4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
USP42Q9H9J4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP42Q9H9J4 HIST2H3DP1-201ENST00000401004 416 ntBASIC23.2■■□□□ 1.3
USP42Q9H9J4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC23.2■■□□□ 1.3
USP42Q9H9J4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.2■■□□□ 1.3
USP42Q9H9J4 ANKRD20A8P-203ENST00000641373 517 ntBASIC23.2■■□□□ 1.3
USP42Q9H9J4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
USP42Q9H9J4 CROCCP3-202ENST00000420820 1947 ntBASIC23.2■■□□□ 1.3
USP42Q9H9J4 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC23.2■■□□□ 1.3
USP42Q9H9J4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
USP42Q9H9J4 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
USP42Q9H9J4 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
USP42Q9H9J4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms