Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 RBM17P3-201ENST00000417687 1192 ntBASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 AC005336.2-201ENST00000593183 939 ntBASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 AFG3L1P-217ENST00000557444 2447 ntBASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC16.47■□□□□ 0.23
SNRNP40Q96DI7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 AC113404.2-201ENST00000507884 177 ntBASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SNRNP40Q96DI7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SNRNP40Q96DI7 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
SNRNP40Q96DI7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
SNRNP40Q96DI7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.46■□□□□ 0.22
SNRNP40Q96DI7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AC112777.1-201ENST00000540175 1423 ntBASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AC068472.1-201ENST00000474589 881 ntBASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 KRT18P41-201ENST00000518924 1277 ntBASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AC008687.5-201ENST00000593746 558 ntBASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 AP001269.4-201ENST00000609611 512 ntBASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.45■□□□□ 0.22
SNRNP40Q96DI7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.44■□□□□ 0.22
SNRNP40Q96DI7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms