Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 HEIH-201ENST00000623091 1652 ntBASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AL645608.8-201ENST00000606034 2086 ntBASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
ZNF540Q8NDQ6 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17■□□□□ 0.31
ZNF540Q8NDQ6 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 AC080080.1-201ENST00000625121 2420 ntBASIC17■□□□□ 0.31
ZNF540Q8NDQ6 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 AC124067.4-201ENST00000519691 2379 ntBASIC17■□□□□ 0.31
ZNF540Q8NDQ6 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 AC093677.2-201ENST00000600169 1863 ntBASIC17■□□□□ 0.31
ZNF540Q8NDQ6 AC084018.2-201ENST00000613093 2607 ntBASIC17■□□□□ 0.31
ZNF540Q8NDQ6 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
ZNF540Q8NDQ6 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
ZNF540Q8NDQ6 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms