Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 AL031963.3-201ENST00000606441 850 ntBASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 FEM1AP3-201ENST00000403722 1741 ntBASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 KRT16P2-201ENST00000414673 1423 ntBASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.65□□□□□ -0.06
CLRN3Q8NCR9 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.65□□□□□ -0.07
CLRN3Q8NCR9 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
CLRN3Q8NCR9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 AC024909.3-201ENST00000611513 2257 ntBASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 AL512631.2-201ENST00000604634 923 ntBASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CLRN3Q8NCR9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 AC008406.3-201ENST00000620001 1374 ntBASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 REXO1L9P-201ENST00000604264 2108 ntBASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 AL603756.1-201ENST00000606511 2163 ntBASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CLRN3Q8NCR9 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CLRN3Q8NCR9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms