Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 AC005082.1-201ENST00000413042 2259 ntBASIC19.37■□□□□ 0.69
CHD9Q3L8U1 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 LAGE3P1-201ENST00000425356 484 ntBASIC19.37■□□□□ 0.69
CHD9Q3L8U1 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 AP002472.1-201ENST00000577490 586 ntBASIC19.37■□□□□ 0.69
CHD9Q3L8U1 AC239800.4-201ENST00000603712 296 ntBASIC19.37■□□□□ 0.69
CHD9Q3L8U1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHD9Q3L8U1 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 MIR770-201ENST00000390219 98 ntBASIC19.36■□□□□ 0.69
CHD9Q3L8U1 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 NKAPP1-205ENST00000585790 367 ntBASIC19.36■□□□□ 0.69
CHD9Q3L8U1 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.36■□□□□ 0.69
CHD9Q3L8U1 AL024508.2-201ENST00000607749 1894 ntBASIC19.36■□□□□ 0.69
CHD9Q3L8U1 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 BCRP1-201ENST00000444246 691 ntBASIC19.35■□□□□ 0.69
CHD9Q3L8U1 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 AL158211.5-201ENST00000623583 2518 ntBASIC19.35■□□□□ 0.69
CHD9Q3L8U1 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.35■□□□□ 0.69
CHD9Q3L8U1 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 MIR1199-201ENST00000621445 119 ntBASIC19.34■□□□□ 0.69
CHD9Q3L8U1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
CHD9Q3L8U1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms