Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.57■□□□□ 0.72
SOX4Q06945 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
SOX4Q06945 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 KRT17P6-201ENST00000453795 1220 ntBASIC19.56■□□□□ 0.72
SOX4Q06945 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.56■□□□□ 0.72
SOX4Q06945 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.56■□□□□ 0.72
SOX4Q06945 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.56■□□□□ 0.72
SOX4Q06945 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.56■□□□□ 0.72
SOX4Q06945 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SOX4Q06945 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 LINC00602-201ENST00000629776 2065 ntBASIC19.56■□□□□ 0.72
SOX4Q06945 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 AC093503.3-201ENST00000624917 2352 ntBASIC19.56■□□□□ 0.72
SOX4Q06945 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SOX4Q06945 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX4Q06945 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.55■□□□□ 0.72
SOX4Q06945 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.55■□□□□ 0.72
SOX4Q06945 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SOX4Q06945 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.55■□□□□ 0.72
SOX4Q06945 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.55■□□□□ 0.72
SOX4Q06945 TSPY19P-201ENST00000418461 509 ntBASIC19.55■□□□□ 0.72
SOX4Q06945 TSPY18P-201ENST00000441642 509 ntBASIC19.55■□□□□ 0.72
SOX4Q06945 AC104819.1-201ENST00000504587 486 ntBASIC19.55■□□□□ 0.72
SOX4Q06945 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SOX4Q06945 AL353801.3-201ENST00000609898 542 ntBASIC19.55■□□□□ 0.72
SOX4Q06945 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SOX4Q06945 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.55■□□□□ 0.72
SOX4Q06945 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SOX4Q06945 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SOX4Q06945 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX4Q06945 AC120498.9-201ENST00000339021 3867 ntBASIC19.54■□□□□ 0.72
SOX4Q06945 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SOX4Q06945 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.54■□□□□ 0.72
SOX4Q06945 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.54■□□□□ 0.72
SOX4Q06945 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.54■□□□□ 0.72
SOX4Q06945 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SOX4Q06945 AC008687.5-201ENST00000593746 558 ntBASIC19.54■□□□□ 0.72
SOX4Q06945 Z69720.1-201ENST00000601483 472 ntBASIC19.54■□□□□ 0.72
SOX4Q06945 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.54■□□□□ 0.72
SOX4Q06945 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.54■□□□□ 0.72
SOX4Q06945 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.54■□□□□ 0.72
SOX4Q06945 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SOX4Q06945 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SOX4Q06945 AC087289.5-201ENST00000586076 3175 ntBASIC19.54■□□□□ 0.72
SOX4Q06945 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SOX4Q06945 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX4Q06945 ESPNP-201ENST00000270691 2015 ntBASIC19.53■□□□□ 0.72
SOX4Q06945 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.53■□□□□ 0.72
SOX4Q06945 NSUN5P1-202ENST00000421140 1535 ntBASIC19.53■□□□□ 0.72
SOX4Q06945 NSUN5P2-203ENST00000457352 1529 ntBASIC19.53■□□□□ 0.72
SOX4Q06945 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.53■□□□□ 0.72
SOX4Q06945 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX4Q06945 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX4Q06945 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.53■□□□□ 0.72
SOX4Q06945 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX4Q06945 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 AC138894.3-201ENST00000603787 634 ntBASIC19.53■□□□□ 0.72
SOX4Q06945 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms