Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.21■□□□□ 0.51
CXCL12P48061 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.21■□□□□ 0.51
CXCL12P48061 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.21■□□□□ 0.51
CXCL12P48061 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CXCL12P48061 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.21■□□□□ 0.51
CXCL12P48061 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.21■□□□□ 0.51
CXCL12P48061 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.21■□□□□ 0.51
CXCL12P48061 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.21■□□□□ 0.51
CXCL12P48061 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
CXCL12P48061 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.21■□□□□ 0.51
CXCL12P48061 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.21■□□□□ 0.51
CXCL12P48061 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CXCL12P48061 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CXCL12P48061 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CXCL12P48061 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.21■□□□□ 0.51
CXCL12P48061 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.5
CXCL12P48061 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.21■□□□□ 0.5
CXCL12P48061 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CXCL12P48061 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC18.2■□□□□ 0.5
CXCL12P48061 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.2■□□□□ 0.5
CXCL12P48061 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CXCL12P48061 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.2■□□□□ 0.5
CXCL12P48061 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.2■□□□□ 0.5
CXCL12P48061 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.2■□□□□ 0.5
CXCL12P48061 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
CXCL12P48061 AC134684.3-201ENST00000641758 218 ntBASIC18.2■□□□□ 0.5
CXCL12P48061 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.2■□□□□ 0.5
CXCL12P48061 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC18.2■□□□□ 0.5
CXCL12P48061 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.2■□□□□ 0.5
CXCL12P48061 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CXCL12P48061 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.19■□□□□ 0.5
CXCL12P48061 UNC93B6-202ENST00000528242 690 ntBASIC18.19■□□□□ 0.5
CXCL12P48061 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC18.19■□□□□ 0.5
CXCL12P48061 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.19■□□□□ 0.5
CXCL12P48061 MTDHP4-201ENST00000600287 670 ntBASIC18.19■□□□□ 0.5
CXCL12P48061 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.19■□□□□ 0.5
CXCL12P48061 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CXCL12P48061 AL157384.1-201ENST00000445995 2473 ntBASIC18.18■□□□□ 0.5
CXCL12P48061 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CXCL12P48061 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 AC004832.2-201ENST00000426397 482 ntBASIC18.18■□□□□ 0.5
CXCL12P48061 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.18■□□□□ 0.5
CXCL12P48061 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 NKAPP1-205ENST00000585790 367 ntBASIC18.18■□□□□ 0.5
CXCL12P48061 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CXCL12P48061 AC107918.4-202ENST00000641623 219 ntBASIC18.18■□□□□ 0.5
CXCL12P48061 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CXCL12P48061 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CXCL12P48061 AC022898.2-201ENST00000616822 1312 ntBASIC18.18■□□□□ 0.5
CXCL12P48061 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CXCL12P48061 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CXCL12P48061 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CXCL12P48061 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms