Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 MTCL1P1-201ENST00000446207 792 ntBASIC20.27■□□□□ 0.84
MMP3P08254 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.27■□□□□ 0.84
MMP3P08254 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 AP001005.1-201ENST00000571755 1248 ntBASIC20.27■□□□□ 0.84
MMP3P08254 AC008608.2-201ENST00000606089 416 ntBASIC20.27■□□□□ 0.84
MMP3P08254 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.27■□□□□ 0.84
MMP3P08254 AL773604.1-201ENST00000617417 272 ntBASIC20.27■□□□□ 0.84
MMP3P08254 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
MMP3P08254 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
MMP3P08254 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MMP3P08254 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.26■□□□□ 0.83
MMP3P08254 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.26■□□□□ 0.83
MMP3P08254 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.26■□□□□ 0.83
MMP3P08254 AL590627.1-203ENST00000421194 1026 ntBASIC20.26■□□□□ 0.83
MMP3P08254 MEG3-211ENST00000452514 461 ntTSL 3 BASIC20.26■□□□□ 0.83
MMP3P08254 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.26■□□□□ 0.83
MMP3P08254 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.26■□□□□ 0.83
MMP3P08254 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.26■□□□□ 0.83
MMP3P08254 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.26■□□□□ 0.83
MMP3P08254 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
MMP3P08254 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP3P08254 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.26■□□□□ 0.83
MMP3P08254 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.25■□□□□ 0.83
MMP3P08254 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC20.25■□□□□ 0.83
MMP3P08254 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.25■□□□□ 0.83
MMP3P08254 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 KRT18P67-201ENST00000432816 1264 ntBASIC20.25■□□□□ 0.83
MMP3P08254 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.25■□□□□ 0.83
MMP3P08254 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
MMP3P08254 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.25■□□□□ 0.83
MMP3P08254 AL138831.2-201ENST00000606564 490 ntBASIC20.25■□□□□ 0.83
MMP3P08254 AC023511.2-201ENST00000618803 211 ntBASIC20.25■□□□□ 0.83
MMP3P08254 AC148477.8-201ENST00000624298 468 ntBASIC20.25■□□□□ 0.83
MMP3P08254 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MMP3P08254 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP3P08254 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.25■□□□□ 0.83
MMP3P08254 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
MMP3P08254 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.24■□□□□ 0.83
MMP3P08254 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.24■□□□□ 0.83
MMP3P08254 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP3P08254 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MMP3P08254 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
MMP3P08254 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP3P08254 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP3P08254 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP3P08254 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP3P08254 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP3P08254 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms