Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC23.01■■□□□ 1.27
CACNA1FO60840 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
CACNA1FO60840 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
CACNA1FO60840 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC23.01■■□□□ 1.27
CACNA1FO60840 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CACNA1FO60840 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC23.01■■□□□ 1.27
CACNA1FO60840 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC23.01■■□□□ 1.27
CACNA1FO60840 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC23.01■■□□□ 1.27
CACNA1FO60840 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC23.01■■□□□ 1.27
CACNA1FO60840 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC23■■□□□ 1.27
CACNA1FO60840 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC23■■□□□ 1.27
CACNA1FO60840 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC23■■□□□ 1.27
CACNA1FO60840 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC23■■□□□ 1.27
CACNA1FO60840 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 TSPY12P-201ENST00000421279 868 ntBASIC23■■□□□ 1.27
CACNA1FO60840 AC096633.1-201ENST00000422446 749 ntBASIC23■■□□□ 1.27
CACNA1FO60840 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC23■■□□□ 1.27
CACNA1FO60840 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
CACNA1FO60840 RN7SL606P-201ENST00000472779 293 ntBASIC23■■□□□ 1.27
CACNA1FO60840 AC092329.2-201ENST00000598402 547 ntBASIC23■■□□□ 1.27
CACNA1FO60840 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC23■■□□□ 1.27
CACNA1FO60840 TSSC2-201ENST00000450217 709 ntBASIC23■■□□□ 1.27
CACNA1FO60840 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC23■■□□□ 1.27
CACNA1FO60840 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC23■■□□□ 1.27
CACNA1FO60840 AC005332.3-201ENST00000589904 676 ntBASIC23■■□□□ 1.27
CACNA1FO60840 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
CACNA1FO60840 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
CACNA1FO60840 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CACNA1FO60840 KRT18P1-202ENST00000452408 1331 ntBASIC22.99■■□□□ 1.27
CACNA1FO60840 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CACNA1FO60840 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
CACNA1FO60840 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC22.99■■□□□ 1.27
CACNA1FO60840 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
CACNA1FO60840 BNIP3P18-201ENST00000593976 575 ntBASIC22.99■■□□□ 1.27
CACNA1FO60840 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CACNA1FO60840 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
CACNA1FO60840 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CACNA1FO60840 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC22.99■■□□□ 1.27
CACNA1FO60840 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CACNA1FO60840 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
CACNA1FO60840 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC22.98■■□□□ 1.27
CACNA1FO60840 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
CACNA1FO60840 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 KRT18P56-201ENST00000507275 550 ntBASIC22.98■■□□□ 1.27
CACNA1FO60840 MIR3652-201ENST00000579335 131 ntBASIC22.98■■□□□ 1.27
CACNA1FO60840 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.98■■□□□ 1.27
CACNA1FO60840 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.98■■□□□ 1.27
CACNA1FO60840 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC22.98■■□□□ 1.27
CACNA1FO60840 HLA-DQB1-201ENST00000374943 1656 ntBASIC22.98■■□□□ 1.27
CACNA1FO60840 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC22.98■■□□□ 1.27
CACNA1FO60840 NSUN5P1-202ENST00000421140 1535 ntBASIC22.98■■□□□ 1.27
CACNA1FO60840 NSUN5P2-203ENST00000457352 1529 ntBASIC22.98■■□□□ 1.27
CACNA1FO60840 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC22.98■■□□□ 1.27
CACNA1FO60840 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC22.98■■□□□ 1.27
CACNA1FO60840 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC22.98■■□□□ 1.27
CACNA1FO60840 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CACNA1FO60840 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC22.97■■□□□ 1.27
CACNA1FO60840 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.97■■□□□ 1.27
CACNA1FO60840 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CACNA1FO60840 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CACNA1FO60840 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC22.97■■□□□ 1.27
CACNA1FO60840 BICD1-207ENST00000551848 1962 ntBASIC22.97■■□□□ 1.27
CACNA1FO60840 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
CACNA1FO60840 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CACNA1FO60840 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC22.97■■□□□ 1.27
CACNA1FO60840 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.97■■□□□ 1.27
CACNA1FO60840 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC22.97■■□□□ 1.27
CACNA1FO60840 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.97■■□□□ 1.27
CACNA1FO60840 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC22.97■■□□□ 1.27
CACNA1FO60840 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms