Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SLC28A1O00337 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.69■□□□□ 0.42
SLC28A1O00337 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
SLC28A1O00337 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.69■□□□□ 0.42
SLC28A1O00337 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.69■□□□□ 0.42
SLC28A1O00337 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.69■□□□□ 0.42
SLC28A1O00337 MIR4674-201ENST00000582457 87 ntBASIC17.69■□□□□ 0.42
SLC28A1O00337 KRT8P7-201ENST00000533003 1432 ntBASIC17.69■□□□□ 0.42
SLC28A1O00337 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.69■□□□□ 0.42
SLC28A1O00337 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 AL096828.2-201ENST00000567259 1965 ntBASIC17.69■□□□□ 0.42
SLC28A1O00337 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SLC28A1O00337 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.69■□□□□ 0.42
SLC28A1O00337 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.69■□□□□ 0.42
SLC28A1O00337 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
SLC28A1O00337 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SLC28A1O00337 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.68■□□□□ 0.42
SLC28A1O00337 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SLC28A1O00337 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SLC28A1O00337 HOXB1-202ENST00000577092 1414 ntBASIC17.68■□□□□ 0.42
SLC28A1O00337 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SLC28A1O00337 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SLC28A1O00337 PHGDH-209ENST00000641074 1780 ntBASIC17.68■□□□□ 0.42
SLC28A1O00337 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SLC28A1O00337 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SLC28A1O00337 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.68■□□□□ 0.42
SLC28A1O00337 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.68■□□□□ 0.42
SLC28A1O00337 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
SLC28A1O00337 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
SLC28A1O00337 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.67■□□□□ 0.42
SLC28A1O00337 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.67■□□□□ 0.42
SLC28A1O00337 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.67■□□□□ 0.42
SLC28A1O00337 SLC25A1P2-201ENST00000430693 912 ntBASIC17.67■□□□□ 0.42
SLC28A1O00337 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.67■□□□□ 0.42
SLC28A1O00337 TSPY17P-201ENST00000450329 467 ntBASIC17.67■□□□□ 0.42
SLC28A1O00337 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.67■□□□□ 0.42
SLC28A1O00337 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SLC28A1O00337 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SLC28A1O00337 SDHAP2-201ENST00000455183 2001 ntBASIC17.67■□□□□ 0.42
SLC28A1O00337 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.67■□□□□ 0.42
SLC28A1O00337 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
SLC28A1O00337 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.67■□□□□ 0.42
SLC28A1O00337 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SLC28A1O00337 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SLC28A1O00337 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.66■□□□□ 0.42
SLC28A1O00337 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SLC28A1O00337 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SLC28A1O00337 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SLC28A1O00337 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SLC28A1O00337 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SLC28A1O00337 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms