Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 ABHD17AP1-201ENST00000358206 933 ntBASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMA1Q9UHB6 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 RPS2P55-201ENST00000397318 883 ntBASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 CRYGFP-201ENST00000418459 633 ntBASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 FAM201B-201ENST00000458407 597 ntBASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 AC107956.1-201ENST00000494359 873 ntBASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 AC113410.3-201ENST00000623366 203 ntBASIC20.08■□□□□ 0.81
LIMA1Q9UHB6 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMA1Q9UHB6 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.8
LIMA1Q9UHB6 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMA1Q9UHB6 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMA1Q9UHB6 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMA1Q9UHB6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMA1Q9UHB6 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.07■□□□□ 0.8
LIMA1Q9UHB6 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 LINC01126-201ENST00000623515 1646 ntBASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 PRORSD1P-201ENST00000295112 541 ntBASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 KRT18P29-201ENST00000397031 1267 ntBASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 KRT8P7-201ENST00000533003 1432 ntBASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 AP005242.2-201ENST00000580065 1175 ntBASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 AL023803.3-201ENST00000615559 522 ntBASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMA1Q9UHB6 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms