Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 TSPY7P-201ENST00000431358 1114 ntBASIC16.43■□□□□ 0.22
VSX1Q9NZR4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 AP003041.3-201ENST00000527151 707 ntBASIC16.43■□□□□ 0.22
VSX1Q9NZR4 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 FITM1-202ENST00000559294 800 ntBASIC16.43■□□□□ 0.22
VSX1Q9NZR4 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.43■□□□□ 0.22
VSX1Q9NZR4 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 KRT8P7-201ENST00000533003 1432 ntBASIC16.43■□□□□ 0.22
VSX1Q9NZR4 HOXB1-202ENST00000577092 1414 ntBASIC16.43■□□□□ 0.22
VSX1Q9NZR4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VSX1Q9NZR4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 TMEM191A-211ENST00000637163 1067 ntBASIC16.42■□□□□ 0.22
VSX1Q9NZR4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 AC092338.2-201ENST00000568827 1415 ntBASIC16.42■□□□□ 0.22
VSX1Q9NZR4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VSX1Q9NZR4 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AL163051.1-201ENST00000569214 1512 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 CCR12P-201ENST00000446203 998 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 WWOX-216ENST00000569818 525 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AP000525.1-201ENST00000608286 694 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 GMCL1P1-201ENST00000463439 1581 ntBASIC16.41■□□□□ 0.22
VSX1Q9NZR4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
VSX1Q9NZR4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms