Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 MFAP1P1-201ENST00000442257 1255 ntBASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 AC008550.1-201ENST00000511500 884 ntBASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 NUDT16P1-203ENST00000513809 620 ntBASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 SLC25A1P4-201ENST00000567977 778 ntBASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRIM56Q9BRZ2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM56Q9BRZ2 AC079598.2-202ENST00000546624 1451 ntBASIC18.77■□□□□ 0.59
TRIM56Q9BRZ2 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AC116562.2-201ENST00000507042 360 ntBASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 REXO1L10P-201ENST00000615707 1290 ntBASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 REXO1L12P-201ENST00000622156 912 ntBASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AC096733.2-201ENST00000609937 1394 ntBASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM56Q9BRZ2 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 AL023284.2-201ENST00000405850 579 ntBASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 MIR4674-201ENST00000582457 87 ntBASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 Z99916.2-201ENST00000604037 246 ntBASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 AL109659.2-201ENST00000606809 1674 ntBASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM56Q9BRZ2 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.74■□□□□ 0.59
TRIM56Q9BRZ2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms