Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.64■■□□□ 1.06
BRF1Q92994 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
BRF1Q92994 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
BRF1Q92994 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.64■■□□□ 1.05
BRF1Q92994 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF1Q92994 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.64■■□□□ 1.05
BRF1Q92994 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BRF1Q92994 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.64■■□□□ 1.05
BRF1Q92994 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.64■■□□□ 1.05
BRF1Q92994 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.64■■□□□ 1.05
BRF1Q92994 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.64■■□□□ 1.05
BRF1Q92994 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.64■■□□□ 1.05
BRF1Q92994 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.64■■□□□ 1.05
BRF1Q92994 AC012306.2-201ENST00000609350 630 ntBASIC21.64■■□□□ 1.05
BRF1Q92994 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
BRF1Q92994 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.64■■□□□ 1.05
BRF1Q92994 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BRF1Q92994 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF1Q92994 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.64■■□□□ 1.05
BRF1Q92994 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF1Q92994 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.64■■□□□ 1.05
BRF1Q92994 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF1Q92994 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.63■■□□□ 1.05
BRF1Q92994 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.63■■□□□ 1.05
BRF1Q92994 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
BRF1Q92994 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.63■■□□□ 1.05
BRF1Q92994 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.63■■□□□ 1.05
BRF1Q92994 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
BRF1Q92994 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 AC010203.1-204ENST00000548782 407 ntBASIC21.63■■□□□ 1.05
BRF1Q92994 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.63■■□□□ 1.05
BRF1Q92994 AC010240.3-201ENST00000607688 395 ntBASIC21.63■■□□□ 1.05
BRF1Q92994 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
BRF1Q92994 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.63■■□□□ 1.05
BRF1Q92994 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
BRF1Q92994 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
BRF1Q92994 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF1Q92994 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRF1Q92994 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 GMCL1P1-201ENST00000463439 1581 ntBASIC21.62■■□□□ 1.05
BRF1Q92994 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF1Q92994 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRF1Q92994 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 NEK4P2-201ENST00000580004 1012 ntBASIC21.62■■□□□ 1.05
BRF1Q92994 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.62■■□□□ 1.05
BRF1Q92994 AL138966.2-201ENST00000621997 464 ntBASIC21.62■■□□□ 1.05
BRF1Q92994 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF1Q92994 AC141257.4-201ENST00000634557 245 ntBASIC21.62■■□□□ 1.05
BRF1Q92994 AC136944.6-201ENST00000634818 245 ntBASIC21.62■■□□□ 1.05
BRF1Q92994 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
BRF1Q92994 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF1Q92994 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.62■■□□□ 1.05
BRF1Q92994 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF1Q92994 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
BRF1Q92994 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF1Q92994 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.61■■□□□ 1.05
BRF1Q92994 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC21.61■■□□□ 1.05
BRF1Q92994 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.61■■□□□ 1.05
BRF1Q92994 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.61■■□□□ 1.05
BRF1Q92994 AC097493.4-201ENST00000641197 219 ntBASIC21.61■■□□□ 1.05
BRF1Q92994 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF1Q92994 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms