Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTR9Q6PD62 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CTR9Q6PD62 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.79■■□□□ 1.08
CTR9Q6PD62 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 IGHGP-201ENST00000390555 1178 ntBASIC21.78■■□□□ 1.08
CTR9Q6PD62 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.78■■□□□ 1.08
CTR9Q6PD62 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.78■■□□□ 1.08
CTR9Q6PD62 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTR9Q6PD62 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 MIR3180-1-201ENST00000580374 94 ntBASIC21.77■■□□□ 1.08
CTR9Q6PD62 MIR3180-3-201ENST00000584616 94 ntBASIC21.77■■□□□ 1.08
CTR9Q6PD62 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTR9Q6PD62 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CTR9Q6PD62 AC126763.1-201ENST00000552015 2118 ntBASIC21.77■■□□□ 1.08
CTR9Q6PD62 AL024508.2-201ENST00000607749 1894 ntBASIC21.77■■□□□ 1.08
CTR9Q6PD62 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CTR9Q6PD62 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTR9Q6PD62 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTR9Q6PD62 KRT89P-201ENST00000620027 1478 ntBASIC21.77■■□□□ 1.07
CTR9Q6PD62 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTR9Q6PD62 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 GPR32P1-201ENST00000601788 811 ntBASIC21.76■■□□□ 1.07
CTR9Q6PD62 AC092119.3-201ENST00000612618 583 ntBASIC21.76■■□□□ 1.07
CTR9Q6PD62 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTR9Q6PD62 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CTR9Q6PD62 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.75■■□□□ 1.07
CTR9Q6PD62 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CTR9Q6PD62 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.75■■□□□ 1.07
CTR9Q6PD62 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.75■■□□□ 1.07
CTR9Q6PD62 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTR9Q6PD62 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTR9Q6PD62 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTR9Q6PD62 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.75■■□□□ 1.07
CTR9Q6PD62 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms