Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LRIF1Q5T3J3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 FAM197Y1-201ENST00000421178 764 ntBASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 MFAP1P1-201ENST00000442257 1255 ntBASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 AL163051.1-201ENST00000569214 1512 ntBASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.34■□□□□ 0.37
LRIF1Q5T3J3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 AC036111.1-201ENST00000533973 1582 ntBASIC17.33■□□□□ 0.37
LRIF1Q5T3J3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 MIR149-201ENST00000384879 89 ntBASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.33■□□□□ 0.36
LRIF1Q5T3J3 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 AC006116.8-202ENST00000587620 1550 ntBASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 AC009102.3-201ENST00000623118 1491 ntBASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 CD177P1-201ENST00000606252 935 ntBASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 AL359736.2-201ENST00000621992 437 ntBASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LRIF1Q5T3J3 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
LRIF1Q5T3J3 HOXB1-202ENST00000577092 1414 ntBASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms