Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 AC004408.2-201ENST00000623613 2777 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 AC104417.2-201ENST00000562989 1793 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 MIR662-201ENST00000384847 95 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 RPS8P6-201ENST00000426177 609 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 HLA-F-220ENST00000434407 884 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 AC098831.1-202ENST00000438821 336 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL28A1Q2UY09 AP000974.1-201ENST00000623909 2387 ntBASIC17.64■□□□□ 0.41
COL28A1Q2UY09 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 RPL13AP23-201ENST00000480739 586 ntBASIC17.63■□□□□ 0.41
COL28A1Q2UY09 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 AP001160.2-201ENST00000596071 487 ntBASIC17.63■□□□□ 0.41
COL28A1Q2UY09 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 AC243591.1-201ENST00000452967 1364 ntBASIC17.63■□□□□ 0.41
COL28A1Q2UY09 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 KRT8P11-201ENST00000409686 1436 ntBASIC17.63■□□□□ 0.41
COL28A1Q2UY09 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL28A1Q2UY09 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 AC116562.4-201ENST00000641316 2276 ntBASIC17.62■□□□□ 0.41
COL28A1Q2UY09 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 AL136038.4-201ENST00000603606 1261 ntBASIC17.62■□□□□ 0.41
COL28A1Q2UY09 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.62■□□□□ 0.41
COL28A1Q2UY09 AC005082.1-201ENST00000413042 2259 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.61■□□□□ 0.41
COL28A1Q2UY09 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL28A1Q2UY09 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms