Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.43■□□□□ 0.7
LHX1P48742 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.43■□□□□ 0.7
LHX1P48742 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.43■□□□□ 0.7
LHX1P48742 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.43■□□□□ 0.7
LHX1P48742 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.43■□□□□ 0.7
LHX1P48742 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.43■□□□□ 0.7
LHX1P48742 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
LHX1P48742 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LHX1P48742 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LHX1P48742 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX1P48742 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX1P48742 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LHX1P48742 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX1P48742 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LHX1P48742 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
LHX1P48742 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.42■□□□□ 0.7
LHX1P48742 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.42■□□□□ 0.7
LHX1P48742 HCG4P8-203ENST00000443049 980 ntBASIC19.42■□□□□ 0.7
LHX1P48742 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.42■□□□□ 0.7
LHX1P48742 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
LHX1P48742 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LHX1P48742 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LHX1P48742 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 GMCL1P1-201ENST00000463439 1581 ntBASIC19.41■□□□□ 0.7
LHX1P48742 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX1P48742 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.41■□□□□ 0.7
LHX1P48742 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.41■□□□□ 0.7
LHX1P48742 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.41■□□□□ 0.7
LHX1P48742 AP002383.4-201ENST00000442518 975 ntBASIC19.41■□□□□ 0.7
LHX1P48742 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX1P48742 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.41■□□□□ 0.7
LHX1P48742 GUSBP12-201ENST00000513727 720 ntBASIC19.41■□□□□ 0.7
LHX1P48742 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LHX1P48742 AC092329.2-201ENST00000598402 547 ntBASIC19.41■□□□□ 0.7
LHX1P48742 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 AC004263.2-201ENST00000617183 678 ntBASIC19.41■□□□□ 0.7
LHX1P48742 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LHX1P48742 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LHX1P48742 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX1P48742 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LHX1P48742 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.41■□□□□ 0.7
LHX1P48742 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.41■□□□□ 0.7
LHX1P48742 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LHX1P48742 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.41■□□□□ 0.7
LHX1P48742 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LHX1P48742 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 LINC01126-201ENST00000623515 1646 ntBASIC19.4■□□□□ 0.7
LHX1P48742 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LHX1P48742 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
LHX1P48742 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX1P48742 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.4■□□□□ 0.7
LHX1P48742 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.4■□□□□ 0.7
LHX1P48742 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.4■□□□□ 0.7
LHX1P48742 KRT18P56-201ENST00000507275 550 ntBASIC19.4■□□□□ 0.7
LHX1P48742 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.4■□□□□ 0.7
LHX1P48742 AP002414.4-201ENST00000589764 1148 ntBASIC19.4■□□□□ 0.7
LHX1P48742 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.4■□□□□ 0.7
LHX1P48742 IGHV3-41-201ENST00000613121 348 ntBASIC19.4■□□□□ 0.7
LHX1P48742 KRT18P1-202ENST00000452408 1331 ntBASIC19.4■□□□□ 0.7
LHX1P48742 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.4■□□□□ 0.7
LHX1P48742 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.4■□□□□ 0.7
LHX1P48742 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LHX1P48742 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LHX1P48742 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.39■□□□□ 0.7
LHX1P48742 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
LHX1P48742 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LHX1P48742 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LHX1P48742 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LHX1P48742 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms