Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.29■□□□□ 0.36
RFX3P48380 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.29■□□□□ 0.36
RFX3P48380 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.29■□□□□ 0.36
RFX3P48380 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.29■□□□□ 0.36
RFX3P48380 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.29■□□□□ 0.36
RFX3P48380 MIR4674-201ENST00000582457 87 ntBASIC17.29■□□□□ 0.36
RFX3P48380 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
RFX3P48380 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RFX3P48380 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.28■□□□□ 0.36
RFX3P48380 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.28■□□□□ 0.36
RFX3P48380 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
RFX3P48380 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.28■□□□□ 0.36
RFX3P48380 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 AC128688.1-201ENST00000487626 519 ntBASIC17.28■□□□□ 0.36
RFX3P48380 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 AL353719.1-201ENST00000566847 864 ntBASIC17.28■□□□□ 0.36
RFX3P48380 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
RFX3P48380 AC010947.1-201ENST00000623454 693 ntBASIC17.28■□□□□ 0.36
RFX3P48380 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.28■□□□□ 0.36
RFX3P48380 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RFX3P48380 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RFX3P48380 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 OR6D1P-203ENST00000641209 4860 ntBASIC17.27■□□□□ 0.36
RFX3P48380 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 AC009113.1-201ENST00000570267 2443 ntBASIC17.27■□□□□ 0.36
RFX3P48380 AL109659.2-201ENST00000606809 1674 ntBASIC17.27■□□□□ 0.36
RFX3P48380 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
RFX3P48380 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
RFX3P48380 AC007663.1-201ENST00000438948 1240 ntBASIC17.27■□□□□ 0.36
RFX3P48380 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.27■□□□□ 0.36
RFX3P48380 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 ECEL1P2-202ENST00000465689 757 ntBASIC17.27■□□□□ 0.36
RFX3P48380 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.27■□□□□ 0.36
RFX3P48380 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.27■□□□□ 0.36
RFX3P48380 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
RFX3P48380 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RFX3P48380 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RFX3P48380 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
RFX3P48380 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.27■□□□□ 0.35
RFX3P48380 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
RFX3P48380 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 LINC01568-207ENST00000641790 1380 ntBASIC17.27■□□□□ 0.35
RFX3P48380 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RFX3P48380 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.27■□□□□ 0.35
RFX3P48380 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.26■□□□□ 0.35
RFX3P48380 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.26■□□□□ 0.35
RFX3P48380 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
RFX3P48380 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms