Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HNF4AP41235 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HNF4AP41235 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HNF4AP41235 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HNF4AP41235 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.83■□□□□ 0.45
HNF4AP41235 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.83■□□□□ 0.45
HNF4AP41235 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
HNF4AP41235 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HNF4AP41235 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.83■□□□□ 0.45
HNF4AP41235 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 ABALON-201ENST00000629058 1903 ntBASIC17.83■□□□□ 0.44
HNF4AP41235 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.83■□□□□ 0.44
HNF4AP41235 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
HNF4AP41235 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.83■□□□□ 0.44
HNF4AP41235 AC099343.3-201ENST00000605834 2503 ntBASIC17.83■□□□□ 0.44
HNF4AP41235 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.83■□□□□ 0.44
HNF4AP41235 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
HNF4AP41235 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.83■□□□□ 0.44
HNF4AP41235 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HNF4AP41235 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.82■□□□□ 0.44
HNF4AP41235 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.82■□□□□ 0.44
HNF4AP41235 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
HNF4AP41235 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
HNF4AP41235 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
HNF4AP41235 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
HNF4AP41235 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.82■□□□□ 0.44
HNF4AP41235 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
HNF4AP41235 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.82■□□□□ 0.44
HNF4AP41235 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.82■□□□□ 0.44
HNF4AP41235 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.82■□□□□ 0.44
HNF4AP41235 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.82■□□□□ 0.44
HNF4AP41235 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
HNF4AP41235 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
HNF4AP41235 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
HNF4AP41235 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HNF4AP41235 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
HNF4AP41235 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HNF4AP41235 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HNF4AP41235 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.81■□□□□ 0.44
HNF4AP41235 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.81■□□□□ 0.44
HNF4AP41235 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HNF4AP41235 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HNF4AP41235 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.8■□□□□ 0.44
HNF4AP41235 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HNF4AP41235 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.8■□□□□ 0.44
HNF4AP41235 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.8■□□□□ 0.44
HNF4AP41235 HMGA1P5-201ENST00000412453 271 ntBASIC17.8■□□□□ 0.44
HNF4AP41235 KRT18P23-201ENST00000435622 1283 ntBASIC17.8■□□□□ 0.44
HNF4AP41235 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.8■□□□□ 0.44
HNF4AP41235 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.8■□□□□ 0.44
HNF4AP41235 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HNF4AP41235 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HNF4AP41235 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.8■□□□□ 0.44
HNF4AP41235 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms