Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGA1P17096 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.02■□□□□ 0.64
HMGA1P17096 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 AL031008.1-201ENST00000619963 541 ntBASIC19.02■□□□□ 0.64
HMGA1P17096 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HMGA1P17096 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.02■□□□□ 0.63
HMGA1P17096 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.02■□□□□ 0.63
HMGA1P17096 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.63
HMGA1P17096 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
HMGA1P17096 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
HMGA1P17096 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
HMGA1P17096 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
HMGA1P17096 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.02■□□□□ 0.63
HMGA1P17096 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
HMGA1P17096 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
HMGA1P17096 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
HMGA1P17096 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGA1P17096 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
HMGA1P17096 AC079781.3-201ENST00000449110 356 ntBASIC19.01■□□□□ 0.63
HMGA1P17096 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGA1P17096 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGA1P17096 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.01■□□□□ 0.63
HMGA1P17096 BNIP3P18-201ENST00000593976 575 ntBASIC19.01■□□□□ 0.63
HMGA1P17096 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HMGA1P17096 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.01■□□□□ 0.63
HMGA1P17096 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
HMGA1P17096 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
HMGA1P17096 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.01■□□□□ 0.63
HMGA1P17096 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
HMGA1P17096 LINC00602-201ENST00000629776 2065 ntBASIC19.01■□□□□ 0.63
HMGA1P17096 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 CROCCP3-202ENST00000420820 1947 ntBASIC19■□□□□ 0.63
HMGA1P17096 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19■□□□□ 0.63
HMGA1P17096 KRT16P4-201ENST00000453883 522 ntBASIC19■□□□□ 0.63
HMGA1P17096 MINOS1P3-201ENST00000457048 203 ntBASIC19■□□□□ 0.63
HMGA1P17096 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 AC005336.2-201ENST00000593183 939 ntBASIC19■□□□□ 0.63
HMGA1P17096 LINC01711-201ENST00000598340 967 ntBASIC19■□□□□ 0.63
HMGA1P17096 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19■□□□□ 0.63
HMGA1P17096 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19■□□□□ 0.63
HMGA1P17096 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
HMGA1P17096 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19■□□□□ 0.63
HMGA1P17096 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19■□□□□ 0.63
HMGA1P17096 KRT8P10-201ENST00000450021 1447 ntBASIC19■□□□□ 0.63
HMGA1P17096 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 AKR1C7P-201ENST00000305623 895 ntBASIC18.99■□□□□ 0.63
HMGA1P17096 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 NUS1P2-201ENST00000417358 873 ntBASIC18.99■□□□□ 0.63
HMGA1P17096 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGA1P17096 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGA1P17096 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGA1P17096 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.99■□□□□ 0.63
HMGA1P17096 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.99■□□□□ 0.63
HMGA1P17096 AC009154.2-201ENST00000621177 724 ntBASIC18.99■□□□□ 0.63
HMGA1P17096 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HMGA1P17096 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.99■□□□□ 0.63
HMGA1P17096 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms