Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 AC073592.4-201ENST00000623827 446 ntBASIC14.19□□□□□ -0.14
COL6A5A8TX70 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 AC108073.2-201ENST00000464002 357 ntBASIC14.19□□□□□ -0.14
COL6A5A8TX70 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 AC105339.1-204ENST00000636249 355 ntBASIC14.19□□□□□ -0.14
COL6A5A8TX70 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A5A8TX70 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A5A8TX70 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 AC004461.1-201ENST00000412461 403 ntBASIC14.18□□□□□ -0.14
COL6A5A8TX70 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 IGHV3-71-201ENST00000523324 359 ntBASIC14.18□□□□□ -0.14
COL6A5A8TX70 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A5A8TX70 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
COL6A5A8TX70 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 UGT1A2P-201ENST00000454886 866 ntBASIC14.17□□□□□ -0.14
COL6A5A8TX70 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 AC084346.2-201ENST00000607097 949 ntBASIC14.17□□□□□ -0.14
COL6A5A8TX70 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 AC005593.1-201ENST00000624894 515 ntBASIC14.17□□□□□ -0.14
COL6A5A8TX70 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL6A5A8TX70 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL6A5A8TX70 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 FAM86GP-201ENST00000448322 971 ntBASIC14.16□□□□□ -0.14
COL6A5A8TX70 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.16□□□□□ -0.14
COL6A5A8TX70 PGM5P2-202ENST00000637225 1043 ntBASIC14.16□□□□□ -0.14
COL6A5A8TX70 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL6A5A8TX70 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms