Protein–RNA interactions for Protein: Q9UQE7

SMC3, Structural maintenance of chromosomes protein 3, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3Q9UQE7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMC3Q9UQE7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 AC116562.2-201ENST00000507042 360 ntBASIC21.63■■□□□ 1.05
SMC3Q9UQE7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMC3Q9UQE7 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 AC034236.2-201ENST00000606662 1610 ntBASIC21.62■■□□□ 1.05
SMC3Q9UQE7 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 NUDT16P1-203ENST00000513809 620 ntBASIC21.62■■□□□ 1.05
SMC3Q9UQE7 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 KRT8P50-201ENST00000562022 1438 ntBASIC21.62■■□□□ 1.05
SMC3Q9UQE7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.62■■□□□ 1.05
SMC3Q9UQE7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 TSPY20P-201ENST00000450910 630 ntBASIC21.61■■□□□ 1.05
SMC3Q9UQE7 AC097488.1-201ENST00000507834 756 ntBASIC21.61■■□□□ 1.05
SMC3Q9UQE7 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMC3Q9UQE7 AP000997.3-201ENST00000623333 2250 ntBASIC21.6■■□□□ 1.05
SMC3Q9UQE7 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC3Q9UQE7 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC3Q9UQE7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.6■■□□□ 1.05
SMC3Q9UQE7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SMC3Q9UQE7 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms