Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC34.9■■■■□ 3.18
SHROOM4Q9ULL8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC34.9■■■■□ 3.18
SHROOM4Q9ULL8 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 CYP51A1P1-201ENST00000492267 1507 ntBASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 CD63-204ENST00000546939 779 ntTSL 3 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC34.89■■■■□ 3.18
SHROOM4Q9ULL8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 AL591424.1-201ENST00000442569 1213 ntBASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC34.88■■■■□ 3.17
SHROOM4Q9ULL8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 FGFR3P6-201ENST00000457012 610 ntBASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
SHROOM4Q9ULL8 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 RBM17P3-201ENST00000417687 1192 ntBASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SHROOM4Q9ULL8 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 AL355877.3-201ENST00000622820 899 ntBASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 ADM-207ENST00000530439 1839 ntTSL 2 BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC34.85■■■■□ 3.17
SHROOM4Q9ULL8 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 LBH-204ENST00000406087 559 ntTSL 4 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AC004967.1-201ENST00000453589 447 ntBASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 PPOX-214ENST00000535223 664 ntTSL 3 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AC010327.4-202ENST00000591484 748 ntBASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AC005332.7-201ENST00000614046 2005 ntBASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SHROOM4Q9ULL8 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC34.83■■■■□ 3.17
SHROOM4Q9ULL8 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms