Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
DDX4Q9NQI0 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
DDX4Q9NQI0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 AC068472.1-201ENST00000474589 881 ntBASIC21.67■■□□□ 1.06
DDX4Q9NQI0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 TP73-AS1-207ENST00000624167 988 ntBASIC21.67■■□□□ 1.06
DDX4Q9NQI0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
DDX4Q9NQI0 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 SAPCD2P3-201ENST00000455031 850 ntBASIC21.66■■□□□ 1.06
DDX4Q9NQI0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
DDX4Q9NQI0 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
DDX4Q9NQI0 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
DDX4Q9NQI0 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 POM121L3P-201ENST00000419331 1163 ntBASIC21.64■■□□□ 1.05
DDX4Q9NQI0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 AC096582.2-201ENST00000510860 516 ntBASIC21.64■■□□□ 1.05
DDX4Q9NQI0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 MIR5100-201ENST00000579544 119 ntBASIC21.64■■□□□ 1.05
DDX4Q9NQI0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
DDX4Q9NQI0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.63■■□□□ 1.05
DDX4Q9NQI0 HLA-A-201ENST00000376802 1334 ntBASIC21.63■■□□□ 1.05
DDX4Q9NQI0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms