Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.16■□□□□ 0.66
CDX2Q99626 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.16■□□□□ 0.66
CDX2Q99626 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CDX2Q99626 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.16■□□□□ 0.66
CDX2Q99626 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CDX2Q99626 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.16■□□□□ 0.66
CDX2Q99626 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.16■□□□□ 0.66
CDX2Q99626 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.16■□□□□ 0.66
CDX2Q99626 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.16■□□□□ 0.66
CDX2Q99626 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX2Q99626 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX2Q99626 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CDX2Q99626 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CDX2Q99626 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX2Q99626 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 HCG4B-203ENST00000450128 991 ntBASIC19.15■□□□□ 0.66
CDX2Q99626 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.15■□□□□ 0.66
CDX2Q99626 MEIS3P1-201ENST00000495167 958 ntBASIC19.15■□□□□ 0.66
CDX2Q99626 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC19.15■□□□□ 0.66
CDX2Q99626 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.15■□□□□ 0.66
CDX2Q99626 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CDX2Q99626 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.15■□□□□ 0.66
CDX2Q99626 MIR4751-201ENST00000578027 74 ntBASIC19.15■□□□□ 0.66
CDX2Q99626 AL390955.2-201ENST00000603032 514 ntBASIC19.15■□□□□ 0.66
CDX2Q99626 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.15■□□□□ 0.66
CDX2Q99626 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CDX2Q99626 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX2Q99626 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.14■□□□□ 0.66
CDX2Q99626 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CDX2Q99626 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.14■□□□□ 0.66
CDX2Q99626 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.14■□□□□ 0.65
CDX2Q99626 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CDX2Q99626 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.14■□□□□ 0.65
CDX2Q99626 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.14■□□□□ 0.65
CDX2Q99626 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.14■□□□□ 0.65
CDX2Q99626 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.14■□□□□ 0.65
CDX2Q99626 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.14■□□□□ 0.65
CDX2Q99626 AC109322.1-201ENST00000524499 1264 ntBASIC19.14■□□□□ 0.65
CDX2Q99626 AC093520.2-201ENST00000561830 333 ntBASIC19.14■□□□□ 0.65
CDX2Q99626 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.14■□□□□ 0.65
CDX2Q99626 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC19.14■□□□□ 0.65
CDX2Q99626 AC009154.2-201ENST00000621177 724 ntBASIC19.14■□□□□ 0.65
CDX2Q99626 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 KRT8P50-201ENST00000562022 1438 ntBASIC19.14■□□□□ 0.65
CDX2Q99626 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CDX2Q99626 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
CDX2Q99626 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.14■□□□□ 0.65
CDX2Q99626 AC079776.2-201ENST00000641154 1609 ntBASIC19.14■□□□□ 0.65
CDX2Q99626 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.14■□□□□ 0.65
CDX2Q99626 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CDX2Q99626 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.13■□□□□ 0.65
CDX2Q99626 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.13■□□□□ 0.65
CDX2Q99626 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.13■□□□□ 0.65
CDX2Q99626 ACTG1P14-201ENST00000446382 1122 ntBASIC19.13■□□□□ 0.65
CDX2Q99626 FAM86GP-201ENST00000448322 971 ntBASIC19.13■□□□□ 0.65
CDX2Q99626 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.13■□□□□ 0.65
CDX2Q99626 INGX-202ENST00000489074 768 ntBASIC19.13■□□□□ 0.65
CDX2Q99626 TERF1P3-201ENST00000505638 1227 ntBASIC19.13■□□□□ 0.65
CDX2Q99626 AC008687.5-201ENST00000593746 558 ntBASIC19.13■□□□□ 0.65
CDX2Q99626 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CDX2Q99626 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
CDX2Q99626 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms