Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
IFT140Q96RY7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
IFT140Q96RY7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
IFT140Q96RY7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
IFT140Q96RY7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC30.38■■■□□ 2.45
IFT140Q96RY7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
IFT140Q96RY7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
IFT140Q96RY7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
IFT140Q96RY7 LBX2-AS1-202ENST00000603175 2083 ntBASIC30.38■■■□□ 2.45
IFT140Q96RY7 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC30.38■■■□□ 2.45
IFT140Q96RY7 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC30.38■■■□□ 2.45
IFT140Q96RY7 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC30.38■■■□□ 2.45
IFT140Q96RY7 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 TCAP-202ENST00000578283 583 ntTSL 5 BASIC30.37■■■□□ 2.45
IFT140Q96RY7 AC093028.1-201ENST00000622998 982 ntBASIC30.37■■■□□ 2.45
IFT140Q96RY7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
IFT140Q96RY7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
IFT140Q96RY7 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
IFT140Q96RY7 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
IFT140Q96RY7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 PUS1-205ENST00000535067 838 ntTSL 3 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
IFT140Q96RY7 FP475955.4-201ENST00000623131 1990 ntBASIC30.36■■■□□ 2.45
IFT140Q96RY7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
IFT140Q96RY7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC30.36■■■□□ 2.45
IFT140Q96RY7 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
IFT140Q96RY7 AC097374.2-201ENST00000618617 1306 ntBASIC30.35■■■□□ 2.45
IFT140Q96RY7 AC009102.3-201ENST00000623118 1491 ntBASIC30.35■■■□□ 2.45
IFT140Q96RY7 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC30.35■■■□□ 2.45
IFT140Q96RY7 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
IFT140Q96RY7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC30.34■■■□□ 2.45
IFT140Q96RY7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC30.34■■■□□ 2.45
IFT140Q96RY7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
IFT140Q96RY7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC30.34■■■□□ 2.45
IFT140Q96RY7 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
IFT140Q96RY7 TSEN15P1-201ENST00000423257 515 ntBASIC30.34■■■□□ 2.45
IFT140Q96RY7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC30.34■■■□□ 2.45
IFT140Q96RY7 HLA-J-202ENST00000469281 1241 ntBASIC30.34■■■□□ 2.45
IFT140Q96RY7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC30.34■■■□□ 2.45
IFT140Q96RY7 AL513190.1-201ENST00000621254 727 ntBASIC30.34■■■□□ 2.45
IFT140Q96RY7 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
IFT140Q96RY7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
IFT140Q96RY7 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
IFT140Q96RY7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC30.34■■■□□ 2.45
IFT140Q96RY7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC30.33■■■□□ 2.45
IFT140Q96RY7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC30.33■■■□□ 2.45
IFT140Q96RY7 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC30.33■■■□□ 2.45
IFT140Q96RY7 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC30.33■■■□□ 2.45
IFT140Q96RY7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC30.33■■■□□ 2.45
IFT140Q96RY7 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC30.33■■■□□ 2.45
IFT140Q96RY7 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
IFT140Q96RY7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC30.33■■■□□ 2.45
IFT140Q96RY7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
IFT140Q96RY7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
IFT140Q96RY7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC30.32■■■□□ 2.44
IFT140Q96RY7 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
IFT140Q96RY7 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC30.32■■■□□ 2.44
IFT140Q96RY7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC30.32■■■□□ 2.44
IFT140Q96RY7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC30.32■■■□□ 2.44
IFT140Q96RY7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
IFT140Q96RY7 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
IFT140Q96RY7 PRSS29P-201ENST00000440800 595 ntBASIC30.31■■■□□ 2.44
IFT140Q96RY7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
IFT140Q96RY7 NFYC-AS1-201ENST00000606277 1687 ntBASIC30.31■■■□□ 2.44
IFT140Q96RY7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC30.31■■■□□ 2.44
IFT140Q96RY7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC30.31■■■□□ 2.44
IFT140Q96RY7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms