Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 SNHG9-202ENST00000564014 471 ntBASIC18.15■□□□□ 0.5
VPS13AQ96RL7 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 AL078644.1-201ENST00000609881 752 ntBASIC18.15■□□□□ 0.5
VPS13AQ96RL7 AC092865.6-201ENST00000642101 219 ntBASIC18.15■□□□□ 0.5
VPS13AQ96RL7 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS13AQ96RL7 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
VPS13AQ96RL7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS13AQ96RL7 KRT89P-201ENST00000620027 1478 ntBASIC18.14■□□□□ 0.5
VPS13AQ96RL7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS13AQ96RL7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 AC005498.2-205ENST00000593218 784 ntBASIC18.14■□□□□ 0.49
VPS13AQ96RL7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS13AQ96RL7 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.13■□□□□ 0.49
VPS13AQ96RL7 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 KRT18P2-201ENST00000447938 1258 ntBASIC18.13■□□□□ 0.49
VPS13AQ96RL7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.13■□□□□ 0.49
VPS13AQ96RL7 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 TEX21P-204ENST00000641479 1693 ntBASIC18.13■□□□□ 0.49
VPS13AQ96RL7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS13AQ96RL7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 Z82202.1-201ENST00000623446 1880 ntBASIC18.12■□□□□ 0.49
VPS13AQ96RL7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 C20orf181-201ENST00000623918 480 ntBASIC18.12■□□□□ 0.49
VPS13AQ96RL7 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 AC125437.2-201ENST00000625180 2167 ntBASIC18.12■□□□□ 0.49
VPS13AQ96RL7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS13AQ96RL7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS13AQ96RL7 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms