Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 AC099343.3-201ENST00000605834 2503 ntBASIC18.44■□□□□ 0.54
HMGB4Q8WW32 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 AF238378.1-201ENST00000526806 358 ntBASIC18.44■□□□□ 0.54
HMGB4Q8WW32 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.44■□□□□ 0.54
HMGB4Q8WW32 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.44■□□□□ 0.54
HMGB4Q8WW32 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB4Q8WW32 MTMR9LP-203ENST00000426597 1545 ntBASIC18.44■□□□□ 0.54
HMGB4Q8WW32 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGB4Q8WW32 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 AP000593.1-201ENST00000393668 712 ntBASIC18.42■□□□□ 0.54
HMGB4Q8WW32 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 AL590627.1-203ENST00000421194 1026 ntBASIC18.42■□□□□ 0.54
HMGB4Q8WW32 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 GPALPP1-207ENST00000611650 899 ntBASIC18.42■□□□□ 0.54
HMGB4Q8WW32 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB4Q8WW32 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 AC096582.2-201ENST00000510860 516 ntBASIC18.41■□□□□ 0.54
HMGB4Q8WW32 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 AL591684.3-201ENST00000605187 298 ntBASIC18.41■□□□□ 0.54
HMGB4Q8WW32 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 TP73-AS1-207ENST00000624167 988 ntBASIC18.41■□□□□ 0.54
HMGB4Q8WW32 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms