Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 BSG-216ENST00000618112 769 ntTSL 219.16■□□□□ 0.666e-77■□□□□ 10.6
DDX55Q8NHQ9 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.64■□□□□ 0.576e-77■□□□□ 10.6
DDX55Q8NHQ9 BSG-205ENST00000571735 2155 ntTSL 217.59■□□□□ 0.416e-77■□□□□ 10.6
DDX55Q8NHQ9 NDUFV1-207ENST00000526169 774 ntTSL 1 (best)23.94■■□□□ 1.422e-6■□□□□ 10.6
DDX55Q8NHQ9 CYB5B-204ENST00000515314 1658 ntTSL 5 BASIC13.18□□□□□ -0.33e-7■□□□□ 10.6
DDX55Q8NHQ9 CYB5B-205ENST00000561792 823 ntTSL 5 BASIC10.28□□□□□ -0.763e-7■□□□□ 10.6
DDX55Q8NHQ9 CYB5B-202ENST00000512062 4358 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.93e-7■□□□□ 10.6
DDX55Q8NHQ9 CYB5B-201ENST00000307892 4286 ntTSL 1 (best) BASIC7.89□□□□□ -1.153e-7■□□□□ 10.6
DDX55Q8NHQ9 TBCD-222ENST00000576677 1926 ntTSL 1 (best)24.46■■□□□ 1.511e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-209ENST00000572794 1380 ntTSL 222.31■■□□□ 1.161e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-208ENST00000572389 776 ntTSL 220.79■□□□□ 0.921e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-223ENST00000576691 929 ntTSL 319.82■□□□□ 0.761e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-221ENST00000576603 765 ntTSL 318.75■□□□□ 0.591e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-220ENST00000576432 684 ntTSL 218.75■□□□□ 0.591e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-226ENST00000577051 979 ntTSL 517.68■□□□□ 0.421e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16■□□□□ 0.151e-6■□□□□ 10.6
DDX55Q8NHQ9 TBCD-201ENST00000355528 7168 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.421e-6■□□□□ 10.6
DDX55Q8NHQ9 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC8.23□□□□□ -1.092e-7■□□□□ 10.6
DDX55Q8NHQ9 AL022318.4-201ENST00000381568 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.642e-21■□□□□ 10.6
DDX55Q8NHQ9 KHDRBS1-203ENST00000484270 1989 ntTSL 521.43■■□□□ 1.023e-6■□□□□ 10.6
DDX55Q8NHQ9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.955e-7■□□□□ 10.6
DDX55Q8NHQ9 KHDRBS1-201ENST00000307714 2738 ntTSL 1 (best)20.61■□□□□ 0.893e-6■□□□□ 10.6
DDX55Q8NHQ9 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.253e-6■□□□□ 10.6
DDX55Q8NHQ9 ZDHHC18-204ENST00000488397 1275 ntTSL 215.71■□□□□ 0.115e-7■□□□□ 10.6
DDX55Q8NHQ9 ACADVL-209ENST00000578033 562 ntTSL 221.28■■□□□ 13e-11■□□□□ 10.6
DDX55Q8NHQ9 ACADVL-235ENST00000583848 503 ntTSL 315.79■□□□□ 0.123e-11■□□□□ 10.6
DDX55Q8NHQ9 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC19.62■□□□□ 0.733e-14■□□□□ 10.6
DDX55Q8NHQ9 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.573e-14■□□□□ 10.6
DDX55Q8NHQ9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.413e-14■□□□□ 10.6
DDX55Q8NHQ9 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.073e-14■□□□□ 10.6
DDX55Q8NHQ9 STMN1-207ENST00000465604 2947 ntTSL 1 (best)4.77□□□□□ -1.653e-14■□□□□ 10.6
DDX55Q8NHQ9 EPB41-208ENST00000460378 5212 ntTSL 1 (best)11.21□□□□□ -0.615e-37■□□□□ 10.6
DDX55Q8NHQ9 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.745e-37■□□□□ 10.6
DDX55Q8NHQ9 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC10.31□□□□□ -0.765e-37■□□□□ 10.6
DDX55Q8NHQ9 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.985e-37■□□□□ 10.6
DDX55Q8NHQ9 MDK-211ENST00000533283 498 ntTSL 318.55■□□□□ 0.564e-10■□□□□ 10.6
DDX55Q8NHQ9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.275e-40■□□□□ 10.6
DDX55Q8NHQ9 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.165e-40■□□□□ 10.6
DDX55Q8NHQ9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.019e-9■□□□□ 10.6
DDX55Q8NHQ9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.11■■□□□ 1.619e-9■□□□□ 10.6
DDX55Q8NHQ9 RNF166-208ENST00000567408 313 ntTSL 224.27■■□□□ 1.489e-9■□□□□ 10.6
DDX55Q8NHQ9 RNF166-205ENST00000562544 502 ntTSL 520.26■□□□□ 0.839e-9■□□□□ 10.6
DDX55Q8NHQ9 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.04■□□□□ 0.649e-9■□□□□ 10.6
DDX55Q8NHQ9 MYL4-210ENST00000576874 641 ntTSL 312.47□□□□□ -0.411e-11■□□□□ 10.6
DDX55Q8NHQ9 MYL4-205ENST00000570772 582 ntTSL 312.47□□□□□ -0.411e-11■□□□□ 10.6
DDX55Q8NHQ9 XRCC5-209ENST00000485763 616 ntTSL 28.36□□□□□ -1.073e-15■□□□□ 10.6
DDX55Q8NHQ9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC28.63■■■□□ 2.173e-7■□□□□ 10.6
DDX55Q8NHQ9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC27.92■■■□□ 2.064e-12■□□□□ 10.6
DDX55Q8NHQ9 ABHD14A-ACY1-203ENST00000486081 1135 ntTSL 525.19■■□□□ 1.626e-9■□□□□ 10.6
DDX55Q8NHQ9 ABHD14A-ACY1-209ENST00000635952 853 ntTSL 325.01■■□□□ 1.596e-9■□□□□ 10.6
DDX55Q8NHQ9 ABHD14A-ACY1-222ENST00000637222 1048 ntTSL 523.62■■□□□ 1.376e-9■□□□□ 10.6
DDX55Q8NHQ9 ACY1-216ENST00000636556 1059 ntTSL 522.16■■□□□ 1.146e-9■□□□□ 10.6
DDX55Q8NHQ9 ACY1-222ENST00000637209 687 ntTSL 522.06■■□□□ 1.126e-9■□□□□ 10.6
DDX55Q8NHQ9 ACY1-225ENST00000637460 884 ntTSL 321.66■■□□□ 1.066e-9■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-206ENST00000417808 923 ntTSL 220.83■□□□□ 0.936e-9■□□□□ 10.6
DDX55Q8NHQ9 KHK-203ENST00000429697 1303 ntTSL 520.63■□□□□ 0.897e-17■□□□□ 10.6
DDX55Q8NHQ9 TATDN2-204ENST00000496355 1456 ntTSL 320.35■□□□□ 0.853e-7■□□□□ 10.6
DDX55Q8NHQ9 ACY1-202ENST00000464587 538 ntTSL 320.13■□□□□ 0.816e-9■□□□□ 10.6
DDX55Q8NHQ9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.45■□□□□ 0.73e-7■□□□□ 10.6
DDX55Q8NHQ9 GUK1-216ENST00000464858 633 ntTSL 318.98■□□□□ 0.633e-12■□□□□ 10.6
DDX55Q8NHQ9 ACY1-223ENST00000637251 1739 ntTSL 518.38■□□□□ 0.536e-9■□□□□ 10.6
DDX55Q8NHQ9 RETSAT-205ENST00000449375 1759 ntTSL 517.56■□□□□ 0.42e-10■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-207ENST00000418143 843 ntTSL 317.08■□□□□ 0.326e-9■□□□□ 10.6
DDX55Q8NHQ9 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.254e-12■□□□□ 10.6
DDX55Q8NHQ9 ABHD14A-ACY1-211ENST00000636085 1188 ntTSL 516.5■□□□□ 0.236e-9■□□□□ 10.6
DDX55Q8NHQ9 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.51□□□□□ -0.093e-7■□□□□ 10.6
DDX55Q8NHQ9 ACY1-205ENST00000469863 755 ntTSL 314.27□□□□□ -0.136e-9■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-210ENST00000433430 4671 ntTSL 513.64□□□□□ -0.236e-9■□□□□ 10.6
DDX55Q8NHQ9 ABHD14A-ACY1-223ENST00000637461 566 ntTSL 513.08□□□□□ -0.326e-9■□□□□ 10.6
DDX55Q8NHQ9 RETSAT-204ENST00000438611 1500 ntTSL 513.07□□□□□ -0.322e-10■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-211ENST00000434477 659 ntTSL 312.49□□□□□ -0.416e-9■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-209ENST00000429283 4332 ntTSL 212.33□□□□□ -0.446e-9■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-201ENST00000273009 3201 ntTSL 2 BASIC12.03□□□□□ -0.486e-9■□□□□ 10.6
DDX55Q8NHQ9 GLDC-204ENST00000477960 762 ntTSL 311.87□□□□□ -0.514e-12■□□□□ 10.6
DDX55Q8NHQ9 PCMTD2-203ENST00000308824 3843 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.583e-7■□□□□ 10.6
DDX55Q8NHQ9 WSB1-201ENST00000262394 5139 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.593e-7■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-203ENST00000390005 3328 ntTSL 1 (best)10.1□□□□□ -0.796e-9■□□□□ 10.6
DDX55Q8NHQ9 WSB1-204ENST00000467843 4187 ntTSL 1 (best)9.3□□□□□ -0.923e-7■□□□□ 10.6
DDX55Q8NHQ9 DIS3L2-202ENST00000325385 3501 ntAPPRIS P1 TSL 5 BASIC8.74□□□□□ -1.016e-9■□□□□ 10.6
DDX55Q8NHQ9 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.186e-9■□□□□ 10.6
DDX55Q8NHQ9 RNU6-6P-201ENST00000606623 107 ntBASIC3.66□□□□□ -1.826e-9■□□□□ 10.6
DDX55Q8NHQ9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.631e-323■□□□□ 10.6
DDX55Q8NHQ9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.591e-323■□□□□ 10.6
DDX55Q8NHQ9 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.85□□□□□ -0.031e-323■□□□□ 10.6
DDX55Q8NHQ9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.141e-6■□□□□ 10.5
DDX55Q8NHQ9 HMG20B-216ENST00000585900 741 ntTSL 322.44■■□□□ 1.181e-6■□□□□ 10.5
DDX55Q8NHQ9 HMG20B-212ENST00000487894 1242 ntTSL 220.79■□□□□ 0.921e-6■□□□□ 10.5
DDX55Q8NHQ9 HMG20B-213ENST00000488973 2434 ntTSL 1 (best)20.18■□□□□ 0.821e-6■□□□□ 10.5
DDX55Q8NHQ9 SEPT5-203ENST00000406172 1996 ntTSL 528.35■■■□□ 2.132e-7■□□□□ 10.5
DDX55Q8NHQ9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.612e-7■□□□□ 10.5
DDX55Q8NHQ9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC22.93■■□□□ 1.262e-7■□□□□ 10.5
DDX55Q8NHQ9 SEPT5-212ENST00000470814 2353 ntTSL 522.06■■□□□ 1.122e-7■□□□□ 10.5
DDX55Q8NHQ9 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.22■□□□□ 0.512e-7■□□□□ 10.5
DDX55Q8NHQ9 SEPT5-211ENST00000455843 4113 ntTSL 1 (best)15.34■□□□□ 0.052e-7■□□□□ 10.5
DDX55Q8NHQ9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.04■■□□□ 1.123e-30■□□□□ 10.5
DDX55Q8NHQ9 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.46■□□□□ 0.223e-30■□□□□ 10.5
DDX55Q8NHQ9 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.79■□□□□ 0.123e-30■□□□□ 10.5
DDX55Q8NHQ9 GSN-205ENST00000373823 3341 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.333e-30■□□□□ 10.5
DDX55Q8NHQ9 SEMA4G-202ENST00000370250 3596 ntAPPRIS ALT1 TSL 5 BASIC11.09□□□□□ -0.631e-6■□□□□ 10.5
DDX55Q8NHQ9 SIGMAR1-207ENST00000497006 610 ntTSL 321.55■■□□□ 1.041e-6■□□□□ 10.5
Retrieved 100 of 15,504 protein–RNA pairs in 106.3 ms