Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 TSPY17P-201ENST00000450329 467 ntBASIC21.03■□□□□ 0.96
ATL3Q6DD88 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 AC009065.1-201ENST00000564055 1225 ntBASIC21.03■□□□□ 0.96
ATL3Q6DD88 MIR3180-4-201ENST00000582223 153 ntBASIC21.03■□□□□ 0.96
ATL3Q6DD88 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.03■□□□□ 0.96
ATL3Q6DD88 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ATL3Q6DD88 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AL355355.2-201ENST00000442321 338 ntBASIC21.02■□□□□ 0.96
ATL3Q6DD88 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AL353719.1-201ENST00000566847 864 ntBASIC21.02■□□□□ 0.96
ATL3Q6DD88 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.02■□□□□ 0.96
ATL3Q6DD88 AC093010.1-201ENST00000473625 1624 ntBASIC21.02■□□□□ 0.96
ATL3Q6DD88 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ATL3Q6DD88 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC21.02■□□□□ 0.95
ATL3Q6DD88 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.02■□□□□ 0.95
ATL3Q6DD88 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 GCSHP5-201ENST00000443090 522 ntBASIC21.01■□□□□ 0.95
ATL3Q6DD88 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
ATL3Q6DD88 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.01■□□□□ 0.95
ATL3Q6DD88 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21■□□□□ 0.95
ATL3Q6DD88 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21■□□□□ 0.95
ATL3Q6DD88 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ATL3Q6DD88 KRT18P23-201ENST00000435622 1283 ntBASIC21■□□□□ 0.95
ATL3Q6DD88 TSPY20P-201ENST00000450910 630 ntBASIC21■□□□□ 0.95
ATL3Q6DD88 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21■□□□□ 0.95
ATL3Q6DD88 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21■□□□□ 0.95
ATL3Q6DD88 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21■□□□□ 0.95
ATL3Q6DD88 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ATL3Q6DD88 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ATL3Q6DD88 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ATL3Q6DD88 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms