Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIM2P55344 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
LIM2P55344 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.49■□□□□ 0.39
LIM2P55344 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIM2P55344 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.48■□□□□ 0.39
LIM2P55344 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.48■□□□□ 0.39
LIM2P55344 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIM2P55344 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.48■□□□□ 0.39
LIM2P55344 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.48■□□□□ 0.39
LIM2P55344 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
LIM2P55344 AC117947.1-201ENST00000427448 529 ntBASIC17.48■□□□□ 0.39
LIM2P55344 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.48■□□□□ 0.39
LIM2P55344 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.48■□□□□ 0.39
LIM2P55344 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.48■□□□□ 0.39
LIM2P55344 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.48■□□□□ 0.39
LIM2P55344 GCSHP2-201ENST00000560971 527 ntBASIC17.48■□□□□ 0.39
LIM2P55344 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
LIM2P55344 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 AC006011.2-201ENST00000621313 1158 ntBASIC17.48■□□□□ 0.39
LIM2P55344 AC011558.1-201ENST00000623459 338 ntBASIC17.48■□□□□ 0.39
LIM2P55344 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIM2P55344 AL133373.2-201ENST00000623187 2828 ntBASIC17.48■□□□□ 0.39
LIM2P55344 AC073592.3-201ENST00000625118 1834 ntBASIC17.48■□□□□ 0.39
LIM2P55344 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.48■□□□□ 0.39
LIM2P55344 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIM2P55344 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 AL163051.1-201ENST00000569214 1512 ntBASIC17.47■□□□□ 0.39
LIM2P55344 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.47■□□□□ 0.39
LIM2P55344 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LIM2P55344 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.47■□□□□ 0.39
LIM2P55344 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.47■□□□□ 0.39
LIM2P55344 YBX1P2-201ENST00000489612 999 ntBASIC17.47■□□□□ 0.39
LIM2P55344 KRT18P21-201ENST00000515767 1272 ntBASIC17.47■□□□□ 0.39
LIM2P55344 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.47■□□□□ 0.39
LIM2P55344 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 AL441883.1-201ENST00000566170 1045 ntBASIC17.47■□□□□ 0.39
LIM2P55344 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.47■□□□□ 0.39
LIM2P55344 AC010240.3-201ENST00000607688 395 ntBASIC17.47■□□□□ 0.39
LIM2P55344 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIM2P55344 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.47■□□□□ 0.39
LIM2P55344 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.47■□□□□ 0.39
LIM2P55344 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.47■□□□□ 0.39
LIM2P55344 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIM2P55344 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
LIM2P55344 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIM2P55344 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.46■□□□□ 0.39
LIM2P55344 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LIM2P55344 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 TMPOP1-202ENST00000424642 1267 ntBASIC17.46■□□□□ 0.39
LIM2P55344 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.46■□□□□ 0.39
LIM2P55344 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.46■□□□□ 0.39
LIM2P55344 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.46■□□□□ 0.39
LIM2P55344 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
LIM2P55344 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LIM2P55344 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.46■□□□□ 0.39
LIM2P55344 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIM2P55344 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms