Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMK1P53667 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
LIMK1P53667 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMK1P53667 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMK1P53667 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 UPF3AP3-201ENST00000420996 769 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 AC098831.1-202ENST00000438821 336 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
LIMK1P53667 MINOS1P3-201ENST00000457048 203 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.18■□□□□ 0.5
LIMK1P53667 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 AP005901.3-202ENST00000581653 237 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 AP001160.2-201ENST00000596071 487 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
LIMK1P53667 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.18■□□□□ 0.5
LIMK1P53667 AC093503.3-201ENST00000624917 2352 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 NEFHP1-201ENST00000412845 2629 ntBASIC18.18■□□□□ 0.5
LIMK1P53667 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
LIMK1P53667 AC026471.1-201ENST00000564629 3026 ntBASIC18.17■□□□□ 0.5
LIMK1P53667 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 KRT8P3-201ENST00000519669 1449 ntBASIC18.17■□□□□ 0.5
LIMK1P53667 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMK1P53667 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMK1P53667 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMK1P53667 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.17■□□□□ 0.5
LIMK1P53667 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMK1P53667 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMK1P53667 AL591684.3-201ENST00000605187 298 ntBASIC18.17■□□□□ 0.5
LIMK1P53667 AC083906.6-201ENST00000641366 219 ntBASIC18.17■□□□□ 0.5
LIMK1P53667 AC079781.4-201ENST00000641908 219 ntBASIC18.17■□□□□ 0.5
LIMK1P53667 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
LIMK1P53667 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMK1P53667 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.17■□□□□ 0.5
LIMK1P53667 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
LIMK1P53667 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.17■□□□□ 0.5
LIMK1P53667 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
LIMK1P53667 AC009237.14-201ENST00000609975 1594 ntBASIC18.17■□□□□ 0.5
LIMK1P53667 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
LIMK1P53667 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMK1P53667 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 HOXB1-202ENST00000577092 1414 ntBASIC18.16■□□□□ 0.5
LIMK1P53667 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMK1P53667 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMK1P53667 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.16■□□□□ 0.5
LIMK1P53667 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMK1P53667 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMK1P53667 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.16■□□□□ 0.5
LIMK1P53667 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMK1P53667 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMK1P53667 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMK1P53667 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.16■□□□□ 0.5
LIMK1P53667 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
LIMK1P53667 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
LIMK1P53667 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LIMK1P53667 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LIMK1P53667 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.16■□□□□ 0.5
LIMK1P53667 AC093484.2-201ENST00000580996 2166 ntBASIC18.15■□□□□ 0.5
LIMK1P53667 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LIMK1P53667 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.15■□□□□ 0.5
LIMK1P53667 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMK1P53667 RPS2P28-201ENST00000314255 741 ntBASIC18.15■□□□□ 0.5
LIMK1P53667 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LIMK1P53667 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMK1P53667 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.15■□□□□ 0.5
LIMK1P53667 SCARNA2-201ENST00000458748 420 ntBASIC18.15■□□□□ 0.5
LIMK1P53667 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms