Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Scn11aQ9R053 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Scn11aQ9R053 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Scn11aQ9R053 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Scn11aQ9R053 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
Scn11aQ9R053 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
Scn11aQ9R053 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Scn11aQ9R053 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Scn11aQ9R053 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Scn11aQ9R053 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
Scn11aQ9R053 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC27.78■■■□□ 2.04
Scn11aQ9R053 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
Scn11aQ9R053 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Scn11aQ9R053 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Scn11aQ9R053 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Scn11aQ9R053 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Scn11aQ9R053 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
Scn11aQ9R053 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC27.77■■■□□ 2.04
Scn11aQ9R053 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
Scn11aQ9R053 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
Scn11aQ9R053 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
Scn11aQ9R053 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Scn11aQ9R053 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Scn11aQ9R053 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Scn11aQ9R053 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
Scn11aQ9R053 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
Scn11aQ9R053 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC27.73■■■□□ 2.03
Scn11aQ9R053 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC27.73■■■□□ 2.03
Scn11aQ9R053 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
Scn11aQ9R053 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
Scn11aQ9R053 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC27.71■■■□□ 2.03
Scn11aQ9R053 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC27.71■■■□□ 2.03
Scn11aQ9R053 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Scn11aQ9R053 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
Scn11aQ9R053 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
Scn11aQ9R053 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
Scn11aQ9R053 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
Scn11aQ9R053 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
Scn11aQ9R053 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
Scn11aQ9R053 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC27.67■■■□□ 2.02
Scn11aQ9R053 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
Scn11aQ9R053 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
Scn11aQ9R053 Gm10420-201ENSMUST00000121713 882 ntBASIC27.65■■■□□ 2.02
Scn11aQ9R053 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
Scn11aQ9R053 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
Scn11aQ9R053 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
Scn11aQ9R053 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
Scn11aQ9R053 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
Scn11aQ9R053 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Scn11aQ9R053 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
Scn11aQ9R053 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
Scn11aQ9R053 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC27.63■■■□□ 2.01
Scn11aQ9R053 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC27.63■■■□□ 2.01
Scn11aQ9R053 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC27.62■■■□□ 2.01
Scn11aQ9R053 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC27.62■■■□□ 2.01
Scn11aQ9R053 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
Scn11aQ9R053 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC27.61■■■□□ 2.01
Scn11aQ9R053 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
Scn11aQ9R053 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
Scn11aQ9R053 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
Scn11aQ9R053 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Scn11aQ9R053 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Scn11aQ9R053 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC27.6■■■□□ 2.01
Scn11aQ9R053 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC27.59■■■□□ 2.01
Scn11aQ9R053 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Scn11aQ9R053 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
Scn11aQ9R053 AC122428.3-201ENSMUST00000215551 2290 ntBASIC27.57■■■□□ 2
Scn11aQ9R053 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC27.57■■■□□ 2
Scn11aQ9R053 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC27.57■■■□□ 2
Scn11aQ9R053 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Scn11aQ9R053 Gm44428-201ENSMUST00000204474 874 ntBASIC27.56■■■□□ 2
Scn11aQ9R053 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.56■■■□□ 2
Scn11aQ9R053 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC27.56■■■□□ 2
Scn11aQ9R053 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC27.55■■■□□ 2
Scn11aQ9R053 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC27.55■■■□□ 2
Scn11aQ9R053 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Scn11aQ9R053 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Scn11aQ9R053 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
Scn11aQ9R053 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC27.54■■■□□ 2
Scn11aQ9R053 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Scn11aQ9R053 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Scn11aQ9R053 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
Scn11aQ9R053 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC27.53■■■□□ 2
Scn11aQ9R053 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC27.53■■■□□ 2
Scn11aQ9R053 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Scn11aQ9R053 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
Scn11aQ9R053 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC27.53■■■□□ 2
Scn11aQ9R053 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC27.53■■■□□ 2
Scn11aQ9R053 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
Scn11aQ9R053 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC27.53■■■□□ 2
Scn11aQ9R053 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC27.52■■■□□ 2
Scn11aQ9R053 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC27.52■■■□□ 2
Scn11aQ9R053 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC27.52■■■□□ 2
Scn11aQ9R053 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC27.52■■■□□ 2
Scn11aQ9R053 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC27.51■■□□□ 1.99
Scn11aQ9R053 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Scn11aQ9R053 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC27.51■■□□□ 1.99
Scn11aQ9R053 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC27.51■■□□□ 1.99
Scn11aQ9R053 Gm5921-201ENSMUST00000075898 882 ntBASIC27.51■■□□□ 1.99
Scn11aQ9R053 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms