Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.89■■■□□ 2.7
Usp40Q8BWR4 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC31.88■■■□□ 2.69
Usp40Q8BWR4 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC31.88■■■□□ 2.69
Usp40Q8BWR4 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
Usp40Q8BWR4 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
Usp40Q8BWR4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp40Q8BWR4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Usp40Q8BWR4 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Usp40Q8BWR4 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Usp40Q8BWR4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Usp40Q8BWR4 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
Usp40Q8BWR4 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC31.84■■■□□ 2.69
Usp40Q8BWR4 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
Usp40Q8BWR4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
Usp40Q8BWR4 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Usp40Q8BWR4 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Usp40Q8BWR4 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC31.81■■■□□ 2.68
Usp40Q8BWR4 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
Usp40Q8BWR4 Gm5067-201ENSMUST00000170449 1009 ntBASIC31.8■■■□□ 2.68
Usp40Q8BWR4 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
Usp40Q8BWR4 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Usp40Q8BWR4 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Usp40Q8BWR4 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Usp40Q8BWR4 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC31.78■■■□□ 2.68
Usp40Q8BWR4 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Usp40Q8BWR4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC31.78■■■□□ 2.68
Usp40Q8BWR4 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
Usp40Q8BWR4 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC31.77■■■□□ 2.68
Usp40Q8BWR4 Gm10420-201ENSMUST00000121713 882 ntBASIC31.76■■■□□ 2.67
Usp40Q8BWR4 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.67
Usp40Q8BWR4 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC31.76■■■□□ 2.67
Usp40Q8BWR4 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
Usp40Q8BWR4 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Usp40Q8BWR4 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
Usp40Q8BWR4 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
Usp40Q8BWR4 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC31.73■■■□□ 2.67
Usp40Q8BWR4 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Usp40Q8BWR4 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Usp40Q8BWR4 Gm44428-201ENSMUST00000204474 874 ntBASIC31.72■■■□□ 2.67
Usp40Q8BWR4 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
Usp40Q8BWR4 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC31.71■■■□□ 2.67
Usp40Q8BWR4 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Usp40Q8BWR4 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
Usp40Q8BWR4 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC31.7■■■□□ 2.66
Usp40Q8BWR4 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC31.69■■■□□ 2.66
Usp40Q8BWR4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Usp40Q8BWR4 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
Usp40Q8BWR4 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Usp40Q8BWR4 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC31.67■■■□□ 2.66
Usp40Q8BWR4 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
Usp40Q8BWR4 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Usp40Q8BWR4 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC31.66■■■□□ 2.66
Usp40Q8BWR4 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC31.66■■■□□ 2.66
Usp40Q8BWR4 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
Usp40Q8BWR4 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
Usp40Q8BWR4 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.64■■■□□ 2.66
Usp40Q8BWR4 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
Usp40Q8BWR4 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
Usp40Q8BWR4 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC31.63■■■□□ 2.65
Usp40Q8BWR4 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC31.62■■■□□ 2.65
Usp40Q8BWR4 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
Usp40Q8BWR4 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC31.61■■■□□ 2.65
Usp40Q8BWR4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Usp40Q8BWR4 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
Usp40Q8BWR4 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Usp40Q8BWR4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Usp40Q8BWR4 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC31.59■■■□□ 2.65
Usp40Q8BWR4 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC31.58■■■□□ 2.65
Usp40Q8BWR4 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
Usp40Q8BWR4 AC122428.3-201ENSMUST00000215551 2290 ntBASIC31.58■■■□□ 2.65
Usp40Q8BWR4 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Usp40Q8BWR4 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
Usp40Q8BWR4 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.65
Usp40Q8BWR4 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Usp40Q8BWR4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Usp40Q8BWR4 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Usp40Q8BWR4 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC31.56■■■□□ 2.64
Usp40Q8BWR4 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC31.55■■■□□ 2.64
Usp40Q8BWR4 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Usp40Q8BWR4 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Usp40Q8BWR4 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Usp40Q8BWR4 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Usp40Q8BWR4 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Usp40Q8BWR4 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Usp40Q8BWR4 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Usp40Q8BWR4 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Usp40Q8BWR4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Usp40Q8BWR4 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Usp40Q8BWR4 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC31.5■■■□□ 2.63
Usp40Q8BWR4 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Usp40Q8BWR4 Gm5921-201ENSMUST00000075898 882 ntBASIC31.5■■■□□ 2.63
Usp40Q8BWR4 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Usp40Q8BWR4 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Usp40Q8BWR4 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC31.48■■■□□ 2.63
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms