Protein–RNA interactions for Protein: Q8BJ37

Tdp1, Tyrosyl-DNA phosphodiesterase 1, mousemouse

Predictions only

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tdp1Q8BJ37 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC25.57■■□□□ 1.68
Tdp1Q8BJ37 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Tdp1Q8BJ37 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Tdp1Q8BJ37 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Tdp1Q8BJ37 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Tdp1Q8BJ37 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Tdp1Q8BJ37 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Tdp1Q8BJ37 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
Tdp1Q8BJ37 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC25.55■■□□□ 1.68
Tdp1Q8BJ37 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
Tdp1Q8BJ37 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Tdp1Q8BJ37 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
Tdp1Q8BJ37 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Tdp1Q8BJ37 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC25.54■■□□□ 1.68
Tdp1Q8BJ37 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Tdp1Q8BJ37 Gm44428-201ENSMUST00000204474 874 ntBASIC25.54■■□□□ 1.68
Tdp1Q8BJ37 Gm5921-201ENSMUST00000075898 882 ntBASIC25.54■■□□□ 1.68
Tdp1Q8BJ37 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC25.53■■□□□ 1.68
Tdp1Q8BJ37 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC25.53■■□□□ 1.68
Tdp1Q8BJ37 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Tdp1Q8BJ37 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Tdp1Q8BJ37 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Tdp1Q8BJ37 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Tdp1Q8BJ37 Gm4419-202ENSMUST00000226239 1431 ntBASIC25.52■■□□□ 1.68
Tdp1Q8BJ37 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
Tdp1Q8BJ37 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Tdp1Q8BJ37 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC25.51■■□□□ 1.67
Tdp1Q8BJ37 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC25.5■■□□□ 1.67
Tdp1Q8BJ37 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
Tdp1Q8BJ37 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC25.49■■□□□ 1.67
Tdp1Q8BJ37 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
Tdp1Q8BJ37 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
Tdp1Q8BJ37 Gm5812-201ENSMUST00000061073 957 ntBASIC25.48■■□□□ 1.67
Tdp1Q8BJ37 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Tdp1Q8BJ37 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
Tdp1Q8BJ37 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Tdp1Q8BJ37 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Tdp1Q8BJ37 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Tdp1Q8BJ37 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
Tdp1Q8BJ37 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
Tdp1Q8BJ37 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC25.44■■□□□ 1.66
Tdp1Q8BJ37 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC25.44■■□□□ 1.66
Tdp1Q8BJ37 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
Tdp1Q8BJ37 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
Tdp1Q8BJ37 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC25.43■■□□□ 1.66
Tdp1Q8BJ37 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
Tdp1Q8BJ37 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.42■■□□□ 1.66
Tdp1Q8BJ37 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Tdp1Q8BJ37 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Tdp1Q8BJ37 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC25.4■■□□□ 1.66
Tdp1Q8BJ37 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.4■■□□□ 1.66
Tdp1Q8BJ37 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Tdp1Q8BJ37 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Tdp1Q8BJ37 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
Tdp1Q8BJ37 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Tdp1Q8BJ37 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC25.38■■□□□ 1.65
Tdp1Q8BJ37 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
Tdp1Q8BJ37 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC25.36■■□□□ 1.65
Tdp1Q8BJ37 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC25.36■■□□□ 1.65
Tdp1Q8BJ37 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
Tdp1Q8BJ37 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Tdp1Q8BJ37 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Tdp1Q8BJ37 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Tdp1Q8BJ37 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Tdp1Q8BJ37 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
Tdp1Q8BJ37 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Tdp1Q8BJ37 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Tdp1Q8BJ37 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC25.34■■□□□ 1.65
Tdp1Q8BJ37 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Tdp1Q8BJ37 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Tdp1Q8BJ37 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Tdp1Q8BJ37 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Tdp1Q8BJ37 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
Tdp1Q8BJ37 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Tdp1Q8BJ37 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
Tdp1Q8BJ37 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC25.32■■□□□ 1.64
Tdp1Q8BJ37 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Tdp1Q8BJ37 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
Tdp1Q8BJ37 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Tdp1Q8BJ37 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Tdp1Q8BJ37 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Tdp1Q8BJ37 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC25.29■■□□□ 1.64
Tdp1Q8BJ37 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Tdp1Q8BJ37 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Tdp1Q8BJ37 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Tdp1Q8BJ37 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Tdp1Q8BJ37 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Gm43592-201ENSMUST00000196922 1165 ntBASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Tdp1Q8BJ37 Fezf2-202ENSMUST00000224023 1917 ntBASIC25.27■■□□□ 1.64
Tdp1Q8BJ37 Gm15546-201ENSMUST00000122095 826 ntBASIC25.27■■□□□ 1.64
Tdp1Q8BJ37 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Tdp1Q8BJ37 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Tdp1Q8BJ37 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 14.9 ms