Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC30.6■■■□□ 2.49
USP48Q86UV5 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC30.6■■■□□ 2.49
USP48Q86UV5 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
USP48Q86UV5 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.59■■■□□ 2.49
USP48Q86UV5 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP48Q86UV5 RPS2-210ENST00000530225 765 ntTSL 2 BASIC30.59■■■□□ 2.49
USP48Q86UV5 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP48Q86UV5 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP48Q86UV5 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP48Q86UV5 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP48Q86UV5 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP48Q86UV5 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP48Q86UV5 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP48Q86UV5 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP48Q86UV5 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP48Q86UV5 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP48Q86UV5 DUX4L18-201ENST00000553347 1267 ntBASIC30.56■■■□□ 2.48
USP48Q86UV5 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC30.56■■■□□ 2.48
USP48Q86UV5 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC30.56■■■□□ 2.48
USP48Q86UV5 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
USP48Q86UV5 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP48Q86UV5 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USP48Q86UV5 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.55■■■□□ 2.48
USP48Q86UV5 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.55■■■□□ 2.48
USP48Q86UV5 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.55■■■□□ 2.48
USP48Q86UV5 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP48Q86UV5 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP48Q86UV5 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.54■■■□□ 2.48
USP48Q86UV5 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.53■■■□□ 2.48
USP48Q86UV5 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.53■■■□□ 2.48
USP48Q86UV5 AC129492.7-201ENST00000622992 756 ntBASIC30.53■■■□□ 2.48
USP48Q86UV5 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC30.52■■■□□ 2.48
USP48Q86UV5 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
USP48Q86UV5 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
USP48Q86UV5 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
USP48Q86UV5 AL035685.1-201ENST00000636663 812 ntBASIC30.52■■■□□ 2.48
USP48Q86UV5 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP48Q86UV5 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP48Q86UV5 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.48
USP48Q86UV5 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.5■■■□□ 2.47
USP48Q86UV5 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
USP48Q86UV5 MOB2-207ENST00000614710 705 ntTSL 5 BASIC30.5■■■□□ 2.47
USP48Q86UV5 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USP48Q86UV5 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USP48Q86UV5 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP48Q86UV5 PEX7-203ENST00000541292 945 ntTSL 5 BASIC30.49■■■□□ 2.47
USP48Q86UV5 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP48Q86UV5 AC142086.6-201ENST00000621154 1765 ntBASIC30.49■■■□□ 2.47
USP48Q86UV5 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
USP48Q86UV5 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.48■■■□□ 2.47
USP48Q86UV5 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
USP48Q86UV5 MED25-214ENST00000622402 642 ntTSL 5 BASIC30.48■■■□□ 2.47
USP48Q86UV5 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
USP48Q86UV5 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
USP48Q86UV5 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USP48Q86UV5 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC30.46■■■□□ 2.47
USP48Q86UV5 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC30.46■■■□□ 2.47
USP48Q86UV5 AL451085.2-201ENST00000605085 799 ntBASIC30.46■■■□□ 2.47
USP48Q86UV5 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
USP48Q86UV5 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC30.46■■■□□ 2.47
USP48Q86UV5 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.46
USP48Q86UV5 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.45■■■□□ 2.46
USP48Q86UV5 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP48Q86UV5 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC30.44■■■□□ 2.46
USP48Q86UV5 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
USP48Q86UV5 AL592293.1-201ENST00000502889 1188 ntBASIC30.44■■■□□ 2.46
USP48Q86UV5 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP48Q86UV5 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
USP48Q86UV5 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
USP48Q86UV5 AL592295.1-201ENST00000400984 884 ntBASIC30.43■■■□□ 2.46
USP48Q86UV5 AC126177.7-201ENST00000547904 679 ntBASIC30.43■■■□□ 2.46
USP48Q86UV5 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
USP48Q86UV5 AL157400.5-201ENST00000507624 621 ntBASIC30.42■■■□□ 2.46
USP48Q86UV5 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.42■■■□□ 2.46
USP48Q86UV5 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP48Q86UV5 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP48Q86UV5 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC30.41■■■□□ 2.46
USP48Q86UV5 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
USP48Q86UV5 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
USP48Q86UV5 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP48Q86UV5 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
USP48Q86UV5 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
USP48Q86UV5 AC133552.2-201ENST00000619106 1032 ntBASIC30.4■■■□□ 2.46
USP48Q86UV5 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
USP48Q86UV5 AL139393.2-201ENST00000608721 2025 ntBASIC30.39■■■□□ 2.46
USP48Q86UV5 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP48Q86UV5 AC007029.1-201ENST00000604183 313 ntBASIC30.39■■■□□ 2.46
USP48Q86UV5 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP48Q86UV5 AC009831.1-201ENST00000580420 1582 ntBASIC30.39■■■□□ 2.46
USP48Q86UV5 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP48Q86UV5 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP48Q86UV5 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
USP48Q86UV5 TRIR-205ENST00000592273 783 ntTSL 3 BASIC30.38■■■□□ 2.45
USP48Q86UV5 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP48Q86UV5 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP48Q86UV5 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.37■■■□□ 2.45
USP48Q86UV5 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
USP48Q86UV5 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP48Q86UV5 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
USP48Q86UV5 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC30.36■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms