Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 MIR564-202ENST00000385049 94 ntBASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 AC092183.1-201ENST00000469884 875 ntBASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 AC024563.2-201ENST00000603282 481 ntBASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 AC148477.8-201ENST00000624298 468 ntBASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMD1Q9UGP4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 MIR940-201ENST00000401276 94 ntBASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 AC009065.1-201ENST00000564055 1225 ntBASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 AC011840.4-201ENST00000578471 627 ntBASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIMD1Q9UGP4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 AF186996.4-201ENST00000467186 377 ntBASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
LIMD1Q9UGP4 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 KRT18P67-201ENST00000432816 1264 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AC093909.1-201ENST00000504731 1122 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AC106730.1-201ENST00000566722 1090 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 TERC-201ENST00000602385 541 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AL591684.3-201ENST00000605187 298 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 PMS2P7-201ENST00000506558 1336 ntBASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIMD1Q9UGP4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms