Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.92■□□□□ 0.3
TIMP4Q99727 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.92■□□□□ 0.3
TIMP4Q99727 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.92■□□□□ 0.3
TIMP4Q99727 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.92■□□□□ 0.3
TIMP4Q99727 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.92■□□□□ 0.3
TIMP4Q99727 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.92■□□□□ 0.3
TIMP4Q99727 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.92■□□□□ 0.3
TIMP4Q99727 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.92■□□□□ 0.3
TIMP4Q99727 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TIMP4Q99727 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.91■□□□□ 0.3
TIMP4Q99727 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.91■□□□□ 0.3
TIMP4Q99727 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.91■□□□□ 0.3
TIMP4Q99727 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.91■□□□□ 0.3
TIMP4Q99727 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TIMP4Q99727 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.91■□□□□ 0.3
TIMP4Q99727 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.91■□□□□ 0.3
TIMP4Q99727 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
TIMP4Q99727 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.91■□□□□ 0.3
TIMP4Q99727 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.91■□□□□ 0.3
TIMP4Q99727 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.91■□□□□ 0.3
TIMP4Q99727 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.91■□□□□ 0.3
TIMP4Q99727 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.91■□□□□ 0.3
TIMP4Q99727 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TIMP4Q99727 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.91■□□□□ 0.3
TIMP4Q99727 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TIMP4Q99727 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TIMP4Q99727 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.91■□□□□ 0.3
TIMP4Q99727 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 AC036111.1-201ENST00000533973 1582 ntBASIC16.9■□□□□ 0.3
TIMP4Q99727 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.9■□□□□ 0.3
TIMP4Q99727 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 MIR3180-5-201ENST00000583743 153 ntBASIC16.9■□□□□ 0.3
TIMP4Q99727 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.9■□□□□ 0.3
TIMP4Q99727 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.9■□□□□ 0.3
TIMP4Q99727 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.9■□□□□ 0.3
TIMP4Q99727 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.9■□□□□ 0.3
TIMP4Q99727 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.9■□□□□ 0.3
TIMP4Q99727 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
TIMP4Q99727 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.9■□□□□ 0.3
TIMP4Q99727 AP000997.3-201ENST00000623333 2250 ntBASIC16.9■□□□□ 0.3
TIMP4Q99727 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.9■□□□□ 0.3
TIMP4Q99727 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TIMP4Q99727 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.9■□□□□ 0.3
TIMP4Q99727 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
TIMP4Q99727 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
TIMP4Q99727 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms