Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 WBP2-208ENST00000588373 1374 ntTSL 219.83■□□□□ 0.773e-7■□□□□ 10.7
DDX55Q8NHQ9 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.423e-7■□□□□ 10.7
DDX55Q8NHQ9 PLIN3-205ENST00000589163 1699 ntTSL 317.11■□□□□ 0.333e-7■□□□□ 10.7
DDX55Q8NHQ9 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC15.55■□□□□ 0.083e-7■□□□□ 10.7
DDX55Q8NHQ9 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.223e-7■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-234ENST00000561001 545 ntTSL 424.03■■□□□ 1.445e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-238ENST00000561375 748 ntTSL 322.55■■□□□ 1.25e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-233ENST00000560901 603 ntTSL 321.14■□□□□ 0.975e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-221ENST00000559382 549 ntTSL 520.08■□□□□ 0.815e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-232ENST00000560713 543 ntTSL 420.08■□□□□ 0.815e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-235ENST00000561016 522 ntTSL 419.84■□□□□ 0.775e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-228ENST00000560171 590 ntTSL 319.79■□□□□ 0.765e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-231ENST00000560614 547 ntTSL 418.07■□□□□ 0.485e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-213ENST00000558638 581 ntTSL 417.32■□□□□ 0.365e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-225ENST00000559593 575 ntTSL 414.59□□□□□ -0.075e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-229ENST00000560457 578 ntTSL 314.06□□□□□ -0.165e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-223ENST00000559451 659 ntTSL 513.41□□□□□ -0.265e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-214ENST00000558706 641 ntTSL 413.41□□□□□ -0.265e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-236ENST00000561041 570 ntTSL 313.12□□□□□ -0.315e-8■□□□□ 10.7
DDX55Q8NHQ9 DCAF11-208ENST00000557888 552 ntTSL 411.21□□□□□ -0.615e-8■□□□□ 10.7
DDX55Q8NHQ9 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.583e-6■□□□□ 10.7
DDX55Q8NHQ9 C7orf50-204ENST00000412051 1147 ntAPPRIS ALT2 TSL 227.02■■□□□ 1.923e-6■□□□□ 10.7
DDX55Q8NHQ9 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.343e-6■□□□□ 10.7
DDX55Q8NHQ9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC22.3■■□□□ 1.163e-6■□□□□ 10.7
DDX55Q8NHQ9 GORASP2-202ENST00000442798 1976 ntTSL 216.48■□□□□ 0.237e-7■□□□□ 10.7
DDX55Q8NHQ9 GORASP2-207ENST00000486498 2096 ntTSL 215.61■□□□□ 0.097e-7■□□□□ 10.7
DDX55Q8NHQ9 BHLHE40-201ENST00000256495 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.228e-7■□□□□ 10.6
DDX55Q8NHQ9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.123e-6■□□□□ 10.6
DDX55Q8NHQ9 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC24.29■■□□□ 1.482e-18■□□□□ 10.6
DDX55Q8NHQ9 CD81-206ENST00000481386 898 ntTSL 223.71■■□□□ 1.393e-70■□□□□ 10.6
DDX55Q8NHQ9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC22.75■■□□□ 1.233e-70■□□□□ 10.6
DDX55Q8NHQ9 CD81-204ENST00000468153 940 ntTSL 222■■□□□ 1.113e-70■□□□□ 10.6
DDX55Q8NHQ9 CD81-216ENST00000531840 5235 ntTSL 1 (best)19.25■□□□□ 0.673e-70■□□□□ 10.6
DDX55Q8NHQ9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.623e-70■□□□□ 10.6
DDX55Q8NHQ9 MRPL2-205ENST00000480286 661 ntTSL 217.78■□□□□ 0.442e-18■□□□□ 10.6
DDX55Q8NHQ9 CD81-209ENST00000492627 886 ntTSL 3 BASIC16.39■□□□□ 0.213e-70■□□□□ 10.6
DDX55Q8NHQ9 MRPL2-203ENST00000468957 689 ntTSL 1 (best) BASIC13.62□□□□□ -0.232e-18■□□□□ 10.6
DDX55Q8NHQ9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.412e-14■□□□□ 10.6
DDX55Q8NHQ9 ASPSCR1-203ENST00000344865 1041 ntTSL 228.09■■■□□ 2.093e-7■□□□□ 10.6
DDX55Q8NHQ9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.772e-7■□□□□ 10.6
DDX55Q8NHQ9 PIEZO1-209ENST00000490756 446 ntTSL 325.47■■□□□ 1.673e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-219ENST00000568265 1140 ntAPPRIS ALT2 TSL 424.29■■□□□ 1.483e-7■□□□□ 10.6
DDX55Q8NHQ9 ASPSCR1-216ENST00000583503 641 ntTSL 322.29■■□□□ 1.163e-7■□□□□ 10.6
DDX55Q8NHQ9 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.063e-7■□□□□ 10.6
DDX55Q8NHQ9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.062e-7■□□□□ 10.6
DDX55Q8NHQ9 ASPSCR1-209ENST00000581484 1001 ntTSL 221.18■□□□□ 0.983e-7■□□□□ 10.6
DDX55Q8NHQ9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.883e-7■□□□□ 10.6
DDX55Q8NHQ9 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.672e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.63e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-208ENST00000563428 2531 ntTSL 218.15■□□□□ 0.53e-7■□□□□ 10.6
DDX55Q8NHQ9 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.67■□□□□ 0.424e-6■□□□□ 10.6
DDX55Q8NHQ9 KRT18-203ENST00000546656 521 ntTSL 217.37■□□□□ 0.373e-17■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-204ENST00000544090 2747 ntTSL 217.11■□□□□ 0.333e-7■□□□□ 10.6
DDX55Q8NHQ9 NUCB1-210ENST00000469291 582 ntTSL 216.83■□□□□ 0.283e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-217ENST00000566903 2628 ntTSL 515.82■□□□□ 0.123e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.13e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-212ENST00000564774 4637 ntTSL 214.36□□□□□ -0.113e-7■□□□□ 10.6
DDX55Q8NHQ9 C14orf2-208ENST00000554713 1058 ntTSL 1 (best) BASIC14.33□□□□□ -0.123e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-201ENST00000341690 3678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.213e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-203ENST00000541676 3502 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.353e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-218ENST00000567759 3879 ntAPPRIS P3 TSL 2 BASIC12.66□□□□□ -0.383e-7■□□□□ 10.6
DDX55Q8NHQ9 C14orf2-212ENST00000557260 856 ntTSL 1 (best)12.53□□□□□ -0.43e-7■□□□□ 10.6
DDX55Q8NHQ9 TAF1C-209ENST00000564208 3810 ntTSL 212.13□□□□□ -0.473e-7■□□□□ 10.6
DDX55Q8NHQ9 FGG-203ENST00000404648 1760 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.759e-8■□□□□ 10.6
DDX55Q8NHQ9 C14orf2-207ENST00000554528 526 ntTSL 210.14□□□□□ -0.793e-7■□□□□ 10.6
DDX55Q8NHQ9 C14orf2-205ENST00000554089 932 ntTSL 1 (best)9.83□□□□□ -0.843e-7■□□□□ 10.6
DDX55Q8NHQ9 FGG-204ENST00000405164 1539 ntTSL 5 BASIC9.52□□□□□ -0.889e-8■□□□□ 10.6
DDX55Q8NHQ9 FGG-209ENST00000465913 1573 ntTSL 28.98□□□□□ -0.979e-8■□□□□ 10.6
DDX55Q8NHQ9 FGG-201ENST00000336098 1659 ntTSL 2 BASIC8.34□□□□□ -1.079e-8■□□□□ 10.6
DDX55Q8NHQ9 FGG-205ENST00000407946 1636 ntTSL 5 BASIC7.15□□□□□ -1.279e-8■□□□□ 10.6
DDX55Q8NHQ9 FGG-212ENST00000492082 2031 ntTSL 56.94□□□□□ -1.39e-8■□□□□ 10.6
DDX55Q8NHQ9 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.99□□□□□ -1.939e-12■□□□□ 10.6
DDX55Q8NHQ9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.579e-8■□□□□ 10.6
DDX55Q8NHQ9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC23.59■■□□□ 1.379e-11■□□□□ 10.6
DDX55Q8NHQ9 B4GALT1-201ENST00000379731 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.379e-11■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC23.99■■□□□ 1.438e-50■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-203ENST00000472367 794 ntTSL 321.93■■□□□ 1.18e-50■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-212ENST00000483588 688 ntTSL 320.92■□□□□ 0.948e-50■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC17.31■□□□□ 0.368e-50■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC16.68■□□□□ 0.263e-24■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-215ENST00000491009 863 ntTSL 216.2■□□□□ 0.186e-85■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC15.22■□□□□ 0.038e-50■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-207ENST00000478103 712 ntTSL 312.92□□□□□ -0.348e-50■□□□□ 10.6
DDX55Q8NHQ9 LRRC75A-AS1-211ENST00000483140 936 ntTSL 25.97□□□□□ -1.458e-50■□□□□ 10.6
DDX55Q8NHQ9 SCD-201ENST00000370355 5362 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.831e-27■□□□□ 10.6
DDX55Q8NHQ9 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.321e-13■□□□□ 10.6
DDX55Q8NHQ9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.131e-13■□□□□ 10.6
DDX55Q8NHQ9 ARVCF-211ENST00000495096 2549 ntTSL 220.71■□□□□ 0.914e-6■□□□□ 10.6
DDX55Q8NHQ9 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.274e-6■□□□□ 10.6
DDX55Q8NHQ9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.254e-6■□□□□ 10.6
DDX55Q8NHQ9 DCXR-211ENST00000579821 452 ntTSL 315.58■□□□□ 0.081e-7■□□□□ 10.6
DDX55Q8NHQ9 DCXR-208ENST00000579004 341 ntTSL 314.82□□□□□ -0.041e-7■□□□□ 10.6
DDX55Q8NHQ9 DCXR-216ENST00000582074 631 ntTSL 313.59□□□□□ -0.231e-7■□□□□ 10.6
DDX55Q8NHQ9 DCXR-202ENST00000577286 553 ntTSL 213.42□□□□□ -0.261e-7■□□□□ 10.6
DDX55Q8NHQ9 RNU6-9-201ENST00000384776 107 ntBASIC3.66□□□□□ -1.824e-30■□□□□ 10.6
DDX55Q8NHQ9 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.2■□□□□ 0.826e-77■□□□□ 10.6
DDX55Q8NHQ9 BSG-215ENST00000618006 1329 ntTSL 2 BASIC20.16■□□□□ 0.826e-77■□□□□ 10.6
DDX55Q8NHQ9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.796e-77■□□□□ 10.6
DDX55Q8NHQ9 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.54■□□□□ 0.726e-77■□□□□ 10.6
DDX55Q8NHQ9 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.54■□□□□ 0.726e-77■□□□□ 10.6
Retrieved 100 of 15,504 protein–RNA pairs in 97.8 ms