Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC105233.6-201ENST00000642093 218 ntBASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SMC1BQ8NDV3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 SDHAP1-207ENST00000440850 2000 ntBASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 LAGE3P1-201ENST00000425356 484 ntBASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 PRSS29P-201ENST00000440800 595 ntBASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 AC011467.2-201ENST00000598425 242 ntBASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 AC006333.2-201ENST00000607957 2099 ntBASIC21.81■■□□□ 1.08
SMC1BQ8NDV3 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MKNK2P1-201ENST00000437526 628 ntBASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 KRT18P2-201ENST00000447938 1258 ntBASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MSRA-206ENST00000521209 814 ntTSL 3 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MIR4745-201ENST00000577608 62 ntBASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.8■■□□□ 1.08
SMC1BQ8NDV3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 CYP51A1P1-201ENST00000492267 1507 ntBASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.79■■□□□ 1.08
SMC1BQ8NDV3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 CD82-202ENST00000342935 967 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 NKAPP1-205ENST00000585790 367 ntBASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 AC027612.4-201ENST00000605371 583 ntBASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms