Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 FDX1P1-201ENST00000449115 551 ntBASIC19.59■□□□□ 0.73
USP41Q3LFD5 EMBP1-201ENST00000458200 901 ntBASIC19.59■□□□□ 0.73
USP41Q3LFD5 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.59■□□□□ 0.73
USP41Q3LFD5 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP41Q3LFD5 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USP41Q3LFD5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP41Q3LFD5 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP41Q3LFD5 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
USP41Q3LFD5 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
USP41Q3LFD5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP41Q3LFD5 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP41Q3LFD5 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 VENTXP7-201ENST00000475503 772 ntBASIC19.58■□□□□ 0.72
USP41Q3LFD5 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.58■□□□□ 0.72
USP41Q3LFD5 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.58■□□□□ 0.72
USP41Q3LFD5 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.58■□□□□ 0.72
USP41Q3LFD5 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 AL161938.1-201ENST00000569833 2180 ntBASIC19.58■□□□□ 0.72
USP41Q3LFD5 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.58■□□□□ 0.72
USP41Q3LFD5 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 KRT8P10-201ENST00000450021 1447 ntBASIC19.58■□□□□ 0.72
USP41Q3LFD5 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USP41Q3LFD5 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 AC099336.1-202ENST00000602961 463 ntBASIC19.57■□□□□ 0.72
USP41Q3LFD5 AC138894.3-201ENST00000603787 634 ntBASIC19.57■□□□□ 0.72
USP41Q3LFD5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 AC083906.6-201ENST00000641366 219 ntBASIC19.57■□□□□ 0.72
USP41Q3LFD5 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 AC098818.2-201ENST00000564925 2320 ntBASIC19.57■□□□□ 0.72
USP41Q3LFD5 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP41Q3LFD5 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.57■□□□□ 0.72
USP41Q3LFD5 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 IGHV3-47-201ENST00000425060 335 ntBASIC19.56■□□□□ 0.72
USP41Q3LFD5 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP41Q3LFD5 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
USP41Q3LFD5 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms