Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.27■■□□□ 1
HMGCS2P54868 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.27■■□□□ 1
HMGCS2P54868 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 AC114341.1-201ENST00000618070 349 ntBASIC21.27■■□□□ 1
HMGCS2P54868 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 AF228730.7-201ENST00000641842 219 ntBASIC21.27■■□□□ 1
HMGCS2P54868 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.27■■□□□ 1
HMGCS2P54868 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
HMGCS2P54868 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HMGCS2P54868 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.27■□□□□ 0.99
HMGCS2P54868 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HMGCS2P54868 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HMGCS2P54868 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
HMGCS2P54868 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HMGCS2P54868 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
HMGCS2P54868 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.26■□□□□ 0.99
HMGCS2P54868 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.26■□□□□ 0.99
HMGCS2P54868 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21.26■□□□□ 0.99
HMGCS2P54868 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.26■□□□□ 0.99
HMGCS2P54868 AC148477.8-201ENST00000624298 468 ntBASIC21.26■□□□□ 0.99
HMGCS2P54868 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 IL9RP2-201ENST00000423948 1312 ntBASIC21.26■□□□□ 0.99
HMGCS2P54868 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HMGCS2P54868 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HMGCS2P54868 AC009102.3-201ENST00000623118 1491 ntBASIC21.26■□□□□ 0.99
HMGCS2P54868 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGCS2P54868 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HMGCS2P54868 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGCS2P54868 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.25■□□□□ 0.99
HMGCS2P54868 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGCS2P54868 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
HMGCS2P54868 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGCS2P54868 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HMGCS2P54868 AC132008.2-207ENST00000454517 770 ntBASIC21.25■□□□□ 0.99
HMGCS2P54868 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HMGCS2P54868 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.25■□□□□ 0.99
HMGCS2P54868 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGCS2P54868 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.25■□□□□ 0.99
HMGCS2P54868 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGCS2P54868 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGCS2P54868 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
HMGCS2P54868 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGCS2P54868 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
HMGCS2P54868 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 KRT18P67-201ENST00000432816 1264 ntBASIC21.24■□□□□ 0.99
HMGCS2P54868 THAP5-204ENST00000438865 868 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.24■□□□□ 0.99
HMGCS2P54868 AC113404.2-201ENST00000507884 177 ntBASIC21.24■□□□□ 0.99
HMGCS2P54868 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.24■□□□□ 0.99
HMGCS2P54868 SLC25A1P1-201ENST00000528351 927 ntBASIC21.24■□□□□ 0.99
HMGCS2P54868 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.24■□□□□ 0.99
HMGCS2P54868 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.24■□□□□ 0.99
HMGCS2P54868 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.24■□□□□ 0.99
HMGCS2P54868 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.24■□□□□ 0.99
HMGCS2P54868 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.24■□□□□ 0.99
HMGCS2P54868 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
HMGCS2P54868 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGCS2P54868 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.23■□□□□ 0.99
HMGCS2P54868 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGCS2P54868 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.23■□□□□ 0.99
HMGCS2P54868 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HMGCS2P54868 AL031284.1-201ENST00000419297 478 ntBASIC21.23■□□□□ 0.99
HMGCS2P54868 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.23■□□□□ 0.99
HMGCS2P54868 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms